Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3699

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3699 and GFF3700 are separated by 334 nucleotides GFF3699 - putative surface-exposed virulence protein, at 78 to 5,765 GFF3699 GFF3700 - Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 6,100 to 7,473 GFF3700 Position (kb) 0 1 2 3 4 5 6Strain fitness (log2 ratio) -1 0 1 2at 0.146 kb on - strandat 0.160 kb on - strandat 0.182 kb on - strandat 0.267 kb on + strandat 0.268 kb on - strandat 0.268 kb on - strandat 0.268 kb on - strandat 0.378 kb on - strandat 0.384 kb on + strandat 0.626 kb on + strandat 0.627 kb on - strandat 0.637 kb on + strandat 0.638 kb on - strandat 0.642 kb on + strandat 0.709 kb on + strand, within GFF3699at 0.776 kb on - strand, within GFF3699at 0.954 kb on + strand, within GFF3699at 1.380 kb on - strand, within GFF3699at 1.381 kb on + strand, within GFF3699at 1.382 kb on - strand, within GFF3699at 1.508 kb on + strand, within GFF3699at 1.508 kb on + strand, within GFF3699at 1.511 kb on + strand, within GFF3699at 1.522 kb on + strand, within GFF3699at 1.522 kb on + strand, within GFF3699at 1.600 kb on + strand, within GFF3699at 1.601 kb on - strand, within GFF3699at 1.648 kb on - strand, within GFF3699at 1.683 kb on - strand, within GFF3699at 1.877 kb on + strand, within GFF3699at 1.965 kb on - strand, within GFF3699at 2.098 kb on + strand, within GFF3699at 2.242 kb on - strand, within GFF3699at 2.603 kb on + strand, within GFF3699at 2.604 kb on - strand, within GFF3699at 2.623 kb on + strand, within GFF3699at 2.623 kb on + strand, within GFF3699at 2.623 kb on + strand, within GFF3699at 2.672 kb on + strand, within GFF3699at 2.673 kb on - strand, within GFF3699at 2.921 kb on - strand, within GFF3699at 2.960 kb on + strand, within GFF3699at 3.002 kb on + strand, within GFF3699at 3.002 kb on + strand, within GFF3699at 3.016 kb on - strand, within GFF3699at 3.048 kb on + strand, within GFF3699at 3.048 kb on + strand, within GFF3699at 3.049 kb on - strand, within GFF3699at 3.049 kb on - strand, within GFF3699at 3.049 kb on - strand, within GFF3699at 3.049 kb on - strand, within GFF3699at 3.049 kb on - strand, within GFF3699at 3.140 kb on - strand, within GFF3699at 3.157 kb on - strand, within GFF3699at 3.164 kb on + strand, within GFF3699at 3.308 kb on + strand, within GFF3699at 3.358 kb on + strand, within GFF3699at 3.433 kb on + strand, within GFF3699at 3.439 kb on + strand, within GFF3699at 3.440 kb on - strand, within GFF3699at 3.440 kb on - strand, within GFF3699at 3.455 kb on + strand, within GFF3699at 3.456 kb on - strand, within GFF3699at 3.456 kb on - strand, within GFF3699at 3.457 kb on + strand, within GFF3699at 3.457 kb on + strand, within GFF3699at 3.457 kb on + strand, within GFF3699at 3.458 kb on - strand, within GFF3699at 3.458 kb on - strand, within GFF3699at 3.458 kb on - strand, within GFF3699at 3.458 kb on - strand, within GFF3699at 3.467 kb on + strand, within GFF3699at 3.467 kb on + strand, within GFF3699at 3.566 kb on + strand, within GFF3699at 3.662 kb on + strand, within GFF3699at 3.663 kb on - strand, within GFF3699at 3.666 kb on - strand, within GFF3699at 3.668 kb on + strand, within GFF3699at 3.730 kb on + strand, within GFF3699at 3.880 kb on - strand, within GFF3699at 3.942 kb on - strand, within GFF3699at 3.978 kb on - strand, within GFF3699at 3.978 kb on - strand, within GFF3699at 3.980 kb on + strand, within GFF3699at 4.007 kb on + strand, within GFF3699at 4.007 kb on + strand, within GFF3699at 4.162 kb on + strand, within GFF3699at 4.349 kb on + strand, within GFF3699at 4.349 kb on + strand, within GFF3699at 4.493 kb on + strand, within GFF3699at 4.748 kb on + strand, within GFF3699at 4.821 kb on - strand, within GFF3699at 4.872 kb on - strand, within GFF3699at 4.872 kb on - strand, within GFF3699at 4.942 kb on + strand, within GFF3699at 4.942 kb on + strand, within GFF3699at 4.952 kb on - strand, within GFF3699at 5.074 kb on + strand, within GFF3699at 5.177 kb on + strand, within GFF3699at 5.178 kb on - strand, within GFF3699at 5.180 kb on + strand, within GFF3699at 5.236 kb on - strandat 5.236 kb on - strandat 5.236 kb on - strandat 5.236 kb on - strandat 5.318 kb on + strandat 5.489 kb on - strandat 5.489 kb on - strandat 5.498 kb on + strandat 5.499 kb on - strandat 5.601 kb on - strandat 5.601 kb on - strandat 6.416 kb on - strand, within GFF3700at 6.709 kb on - strand, within GFF3700

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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146 - +0.8
160 - +0.1
182 - -0.1
267 + +0.1
268 - +0.3
268 - +0.9
268 - -1.0
378 - -1.0
384 + +0.3
626 + -0.2
627 - -0.1
637 + -0.7
638 - -0.0
642 + -0.1
709 + GFF3699 0.11 +0.7
776 - GFF3699 0.12 -0.0
954 + GFF3699 0.15 +1.6
1,380 - GFF3699 0.23 -0.1
1,381 + GFF3699 0.23 -0.8
1,382 - GFF3699 0.23 +0.2
1,508 + GFF3699 0.25 +2.1
1,508 + GFF3699 0.25 +0.0
1,511 + GFF3699 0.25 +1.1
1,522 + GFF3699 0.25 -0.0
1,522 + GFF3699 0.25 -0.2
1,600 + GFF3699 0.27 +0.1
1,601 - GFF3699 0.27 -0.1
1,648 - GFF3699 0.28 +0.3
1,683 - GFF3699 0.28 +0.4
1,877 + GFF3699 0.32 +0.2
1,965 - GFF3699 0.33 +0.5
2,098 + GFF3699 0.36 -0.5
2,242 - GFF3699 0.38 +0.0
2,603 + GFF3699 0.44 +0.4
2,604 - GFF3699 0.44 -0.7
2,623 + GFF3699 0.45 +0.3
2,623 + GFF3699 0.45 +0.2
2,623 + GFF3699 0.45 -0.1
2,672 + GFF3699 0.46 +1.4
2,673 - GFF3699 0.46 -0.5
2,921 - GFF3699 0.50 +0.4
2,960 + GFF3699 0.51 -0.1
3,002 + GFF3699 0.51 +0.2
3,002 + GFF3699 0.51 +0.6
3,016 - GFF3699 0.52 -0.0
3,048 + GFF3699 0.52 +0.3
3,048 + GFF3699 0.52 +0.1
3,049 - GFF3699 0.52 +0.1
3,049 - GFF3699 0.52 +0.1
3,049 - GFF3699 0.52 +0.3
3,049 - GFF3699 0.52 +0.6
3,049 - GFF3699 0.52 +0.2
3,140 - GFF3699 0.54 +0.2
3,157 - GFF3699 0.54 +0.4
3,164 + GFF3699 0.54 +0.0
3,308 + GFF3699 0.57 +0.2
3,358 + GFF3699 0.58 +0.0
3,433 + GFF3699 0.59 -0.2
3,439 + GFF3699 0.59 +0.8
3,440 - GFF3699 0.59 -0.1
3,440 - GFF3699 0.59 +0.2
3,455 + GFF3699 0.59 +0.2
3,456 - GFF3699 0.59 +0.0
3,456 - GFF3699 0.59 -0.3
3,457 + GFF3699 0.59 -0.1
3,457 + GFF3699 0.59 -0.1
3,457 + GFF3699 0.59 +0.2
3,458 - GFF3699 0.59 -0.4
3,458 - GFF3699 0.59 +0.4
3,458 - GFF3699 0.59 +0.1
3,458 - GFF3699 0.59 +0.7
3,467 + GFF3699 0.60 +1.5
3,467 + GFF3699 0.60 +0.2
3,566 + GFF3699 0.61 +0.0
3,662 + GFF3699 0.63 -0.1
3,663 - GFF3699 0.63 +0.1
3,666 - GFF3699 0.63 +0.3
3,668 + GFF3699 0.63 +0.6
3,730 + GFF3699 0.64 +0.4
3,880 - GFF3699 0.67 +0.1
3,942 - GFF3699 0.68 +0.7
3,978 - GFF3699 0.69 -0.3
3,978 - GFF3699 0.69 -0.1
3,980 + GFF3699 0.69 +0.3
4,007 + GFF3699 0.69 -0.2
4,007 + GFF3699 0.69 +0.3
4,162 + GFF3699 0.72 +0.1
4,349 + GFF3699 0.75 +0.2
4,349 + GFF3699 0.75 -0.2
4,493 + GFF3699 0.78 +0.0
4,748 + GFF3699 0.82 +0.8
4,821 - GFF3699 0.83 +1.1
4,872 - GFF3699 0.84 +0.5
4,872 - GFF3699 0.84 +0.3
4,942 + GFF3699 0.86 -0.4
4,942 + GFF3699 0.86 +0.0
4,952 - GFF3699 0.86 -0.2
5,074 + GFF3699 0.88 +0.3
5,177 + GFF3699 0.90 -0.1
5,178 - GFF3699 0.90 -0.3
5,180 + GFF3699 0.90 +0.0
5,236 - +0.6
5,236 - +0.2
5,236 - -1.7
5,236 - +0.4
5,318 + -0.2
5,489 - -0.0
5,489 - +0.8
5,498 + +0.4
5,499 - +0.3
5,601 - -0.1
5,601 - -0.2
6,416 - GFF3700 0.23 +1.1
6,709 - GFF3700 0.44 +0.4

Or see this region's nucleotide sequence