Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3666 and GFF3667 are separated by 172 nucleotides GFF3667 and GFF3668 are separated by 113 nucleotides GFF3668 and GFF3669 are separated by 155 nucleotides GFF3669 and GFF3670 are separated by 280 nucleotides
GFF3666 - Putative metalloprotease yggG (EC 3.4.24.-), at 15,660 to 16,421
GFF3666
GFF3667 - Cytidylate kinase (EC 2.7.4.25), at 16,594 to 17,277
GFF3667
GFF3668 - SSU ribosomal protein S1p, at 17,391 to 19,064
GFF3668
GFF3669 - Integration host factor beta subunit, at 19,220 to 19,504
GFF3669
GFF3670 - DNA internalization-related competence protein ComEC/Rec2, at 19,785 to 21,998
GFF3670
Position (kb)
17
18
19
20 Strain fitness (log2 ratio)
-2
-1
0
1 at 16.476 kb on - strand at 16.718 kb on + strand, within GFF3667 at 17.068 kb on - strand, within GFF3667 at 17.068 kb on - strand, within GFF3667 at 17.296 kb on + strand at 19.109 kb on - strand at 19.136 kb on + strand at 19.315 kb on + strand, within GFF3669 at 19.315 kb on + strand, within GFF3669 at 19.562 kb on + strand at 19.763 kb on - strand at 19.766 kb on - strand at 19.789 kb on + strand at 19.799 kb on - strand at 19.808 kb on + strand at 19.888 kb on + strand at 20.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 16,476 - +0.2 16,718 + GFF3667 0.18 -0.8 17,068 - GFF3667 0.69 -2.7 17,068 - GFF3667 0.69 -1.4 17,296 + +0.3 19,109 - -1.6 19,136 + -0.8 19,315 + GFF3669 0.33 -1.1 19,315 + GFF3669 0.33 -0.6 19,562 + -0.5 19,763 - -0.0 19,766 - +0.6 19,789 + +1.1 19,799 - +0.9 19,808 + -0.4 19,888 + +0.3 20,004 - +0.2
Or see this region's nucleotide sequence