Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3445 and GFF3446 are separated by 193 nucleotides GFF3446 and GFF3648 are separated by 8 nucleotides GFF3648 and GFF3447 are separated by 108 nucleotides GFF3447 and GFF3448 are separated by 27 nucleotides
GFF3445 - Putative inner membrane protein, at 206,042 to 207,175
GFF3445
GFF3446 - Ferredoxin, at 207,369 to 207,695
GFF3446
GFF3648 - tRNA-Arg-TCT, at 207,704 to 207,780
GFF3648
GFF3447 - Candidate zinc-binding lipoprotein ZinT, at 207,889 to 208,539
GFF3447
GFF3448 - 'Streptomycin 3''-O-adenylyltransferase (EC 2.7.7.47) @ Spectinomycin 9-O-adenylyltransferase' transl_table=11, at 208,567 to 209,436
GFF3448
Position (kb) 207
208 Strain fitness (log2 ratio) -1
0
1 at 206.796 kb on + strand, within GFF3445 at 206.822 kb on + strand, within GFF3445 at 206.959 kb on + strand, within GFF3445 at 206.989 kb on + strand, within GFF3445 at 206.990 kb on - strand, within GFF3445 at 207.043 kb on + strand, within GFF3445 at 207.044 kb on - strand, within GFF3445 at 207.046 kb on - strand, within GFF3445 at 207.056 kb on - strand, within GFF3445 at 207.079 kb on - strand at 207.205 kb on + strand at 207.212 kb on + strand at 207.213 kb on - strand at 207.213 kb on - strand at 207.335 kb on + strand at 207.340 kb on - strand at 207.340 kb on - strand at 207.491 kb on - strand, within GFF3446 at 207.533 kb on + strand, within GFF3446 at 207.740 kb on + strand, within GFF3648 at 208.033 kb on - strand, within GFF3447 at 208.069 kb on - strand, within GFF3447 at 208.190 kb on - strand, within GFF3447 at 208.232 kb on + strand, within GFF3447 at 208.342 kb on - strand, within GFF3447 at 208.479 kb on + strand at 208.483 kb on + strand at 208.484 kb on - strand at 208.537 kb on + strand at 208.538 kb on - strand at 208.538 kb on - strand at 208.538 kb on - strand at 208.619 kb on + strand at 208.746 kb on - strand, within GFF3448
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 206,796 + GFF3445 0.66 +0.7 206,822 + GFF3445 0.69 +0.3 206,959 + GFF3445 0.81 -1.2 206,989 + GFF3445 0.84 +0.2 206,990 - GFF3445 0.84 +0.5 207,043 + GFF3445 0.88 +0.3 207,044 - GFF3445 0.88 -0.1 207,046 - GFF3445 0.89 -0.4 207,056 - GFF3445 0.89 -0.5 207,079 - -0.3 207,205 + -0.2 207,212 + -0.3 207,213 - -1.1 207,213 - -0.3 207,335 + +0.4 207,340 - -0.1 207,340 - -0.1 207,491 - GFF3446 0.37 +0.4 207,533 + GFF3446 0.50 +1.0 207,740 + GFF3648 0.47 +0.6 208,033 - GFF3447 0.22 -0.5 208,069 - GFF3447 0.28 +0.1 208,190 - GFF3447 0.46 +0.1 208,232 + GFF3447 0.53 +0.5 208,342 - GFF3447 0.70 +0.6 208,479 + +0.3 208,483 + +0.3 208,484 - -0.3 208,537 + -0.3 208,538 - +0.5 208,538 - +1.3 208,538 - +0.8 208,619 + -1.4 208,746 - GFF3448 0.21 -0.1
Or see this region's nucleotide sequence