Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3616 and GFF3617 are separated by 112 nucleotides GFF3617 and GFF3618 overlap by 4 nucleotides
GFF3616 - Putative transport protein, at 367,726 to 368,931
GFF3616
GFF3617 - LysR-family transcriptional regulator YdhB, at 369,044 to 369,976
GFF3617
GFF3618 - Purine nucleotide synthesis repressor, at 369,973 to 370,998
GFF3618
Position (kb) 369
370 Strain fitness (log2 ratio) -1
0
1 at 368.099 kb on + strand, within GFF3616 at 368.100 kb on - strand, within GFF3616 at 368.107 kb on + strand, within GFF3616 at 368.107 kb on + strand, within GFF3616 at 368.108 kb on - strand, within GFF3616 at 368.201 kb on + strand, within GFF3616 at 368.201 kb on + strand, within GFF3616 at 368.332 kb on + strand, within GFF3616 at 368.356 kb on - strand, within GFF3616 at 368.356 kb on - strand, within GFF3616 at 368.424 kb on + strand, within GFF3616 at 368.695 kb on - strand, within GFF3616 at 368.755 kb on + strand, within GFF3616 at 368.755 kb on + strand, within GFF3616 at 368.858 kb on + strand at 368.858 kb on + strand at 368.859 kb on - strand at 368.859 kb on - strand at 368.909 kb on - strand at 368.932 kb on - strand at 369.193 kb on - strand, within GFF3617 at 369.324 kb on + strand, within GFF3617 at 369.328 kb on + strand, within GFF3617 at 369.329 kb on - strand, within GFF3617 at 369.903 kb on - strand at 370.084 kb on + strand, within GFF3618 at 370.090 kb on - strand, within GFF3618 at 370.090 kb on - strand, within GFF3618 at 370.093 kb on - strand, within GFF3618 at 370.320 kb on - strand, within GFF3618 at 370.500 kb on - strand, within GFF3618 at 370.581 kb on + strand, within GFF3618 at 370.679 kb on + strand, within GFF3618 at 370.680 kb on - strand, within GFF3618 at 370.808 kb on - strand, within GFF3618 at 370.879 kb on - strand, within GFF3618 at 370.937 kb on - strand at 370.945 kb on + strand at 370.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 368,099 + GFF3616 0.31 -0.3 368,100 - GFF3616 0.31 -0.0 368,107 + GFF3616 0.32 +0.1 368,107 + GFF3616 0.32 +0.6 368,108 - GFF3616 0.32 +0.2 368,201 + GFF3616 0.39 -0.2 368,201 + GFF3616 0.39 -0.1 368,332 + GFF3616 0.50 +0.6 368,356 - GFF3616 0.52 -1.4 368,356 - GFF3616 0.52 -0.2 368,424 + GFF3616 0.58 +0.3 368,695 - GFF3616 0.80 -0.7 368,755 + GFF3616 0.85 -1.6 368,755 + GFF3616 0.85 +0.2 368,858 + +1.7 368,858 + +0.4 368,859 - +0.1 368,859 - +0.3 368,909 - -0.1 368,932 - +0.3 369,193 - GFF3617 0.16 +0.1 369,324 + GFF3617 0.30 -0.1 369,328 + GFF3617 0.30 -1.4 369,329 - GFF3617 0.31 +0.6 369,903 - +0.1 370,084 + GFF3618 0.11 -0.0 370,090 - GFF3618 0.11 +1.0 370,090 - GFF3618 0.11 +0.8 370,093 - GFF3618 0.12 +0.5 370,320 - GFF3618 0.34 -0.0 370,500 - GFF3618 0.51 -0.7 370,581 + GFF3618 0.59 -0.4 370,679 + GFF3618 0.69 +0.1 370,680 - GFF3618 0.69 +0.6 370,808 - GFF3618 0.81 +0.8 370,879 - GFF3618 0.88 +0.3 370,937 - +0.1 370,945 + -0.8 370,953 + +0.0
Or see this region's nucleotide sequence