Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3610 and GFF3611 are separated by 0 nucleotides GFF3611 and GFF3612 overlap by 4 nucleotides GFF3612 and GFF3649 are separated by 157 nucleotides GFF3649 and GFF3650 are separated by 10 nucleotides GFF3650 and GFF3613 are separated by 151 nucleotides
GFF3610 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 361,594 to 361,707
GFF3610
GFF3611 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 361,708 to 362,487
GFF3611
GFF3612 - Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components), at 362,484 to 363,542
GFF3612
GFF3649 - tRNA-Val-GAC, at 363,700 to 363,776
GFF3649
GFF3650 - tRNA-Val-GAC, at 363,787 to 363,863
GFF3650
GFF3613 - Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps, at 364,015 to 365,388
GFF3613
Position (kb) 362
363
364 Strain fitness (log2 ratio) -2
-1
0
1 at 363.259 kb on + strand, within GFF3612 at 363.362 kb on + strand, within GFF3612 at 363.597 kb on - strand at 363.647 kb on - strand at 363.856 kb on - strand at 364.014 kb on - strand at 364.061 kb on - strand at 364.061 kb on - strand at 364.179 kb on - strand, within GFF3613 at 364.245 kb on + strand, within GFF3613 at 364.279 kb on + strand, within GFF3613 at 364.319 kb on - strand, within GFF3613 at 364.319 kb on - strand, within GFF3613 at 364.359 kb on - strand, within GFF3613 at 364.371 kb on + strand, within GFF3613 at 364.416 kb on + strand, within GFF3613
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 363,259 + GFF3612 0.73 -0.3 363,362 + GFF3612 0.83 -0.3 363,597 - +0.8 363,647 - -2.6 363,856 - -0.6 364,014 - +0.3 364,061 - +0.1 364,061 - +0.6 364,179 - GFF3613 0.12 -0.1 364,245 + GFF3613 0.17 +0.5 364,279 + GFF3613 0.19 +0.7 364,319 - GFF3613 0.22 +0.1 364,319 - GFF3613 0.22 +0.2 364,359 - GFF3613 0.25 +1.1 364,371 + GFF3613 0.26 -0.3 364,416 + GFF3613 0.29 -0.6
Or see this region's nucleotide sequence