Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3584 and GFF3585 overlap by 8 nucleotides GFF3585 and GFF3586 are separated by 16 nucleotides GFF3586 and GFF3587 are separated by 263 nucleotides GFF3587 and GFF3588 are separated by 6 nucleotides
GFF3584 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 342,455 to 343,948
GFF3584
GFF3585 - Secretion system apparatus SsaD, at 343,941 to 345,140
GFF3585
GFF3586 - Secretion system effector SsaE, at 345,157 to 345,390
GFF3586
GFF3587 - Secretion system effector SseA, at 345,654 to 345,980
GFF3587
GFF3588 - Secretion system effector SseB, at 345,987 to 346,577
GFF3588
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -1
0
1 at 342.985 kb on - strand, within GFF3584 at 342.989 kb on - strand, within GFF3584 at 342.990 kb on + strand, within GFF3584 at 342.991 kb on - strand, within GFF3584 at 343.000 kb on + strand, within GFF3584 at 343.000 kb on + strand, within GFF3584 at 343.001 kb on - strand, within GFF3584 at 343.367 kb on - strand, within GFF3584 at 344.257 kb on + strand, within GFF3585 at 344.686 kb on + strand, within GFF3585 at 344.837 kb on - strand, within GFF3585 at 345.134 kb on + strand at 345.221 kb on + strand, within GFF3586 at 345.221 kb on + strand, within GFF3586 at 345.426 kb on + strand at 345.426 kb on + strand at 345.476 kb on - strand at 345.643 kb on + strand at 346.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 342,985 - GFF3584 0.35 -0.0 342,989 - GFF3584 0.36 +0.6 342,990 + GFF3584 0.36 +0.8 342,991 - GFF3584 0.36 +0.8 343,000 + GFF3584 0.36 +0.1 343,000 + GFF3584 0.36 +0.2 343,001 - GFF3584 0.37 -0.0 343,367 - GFF3584 0.61 +0.6 344,257 + GFF3585 0.26 +0.6 344,686 + GFF3585 0.62 +0.2 344,837 - GFF3585 0.75 +0.4 345,134 + +1.2 345,221 + GFF3586 0.27 -0.4 345,221 + GFF3586 0.27 -1.3 345,426 + +0.4 345,426 + -0.3 345,476 - -0.3 345,643 + +0.2 346,006 + +0.5
Or see this region's nucleotide sequence