Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3573 and GFF3574 are separated by 0 nucleotides GFF3574 and GFF3575 are separated by 181 nucleotides
GFF3573 - Tetrathionate reductase subunit C, at 331,463 to 332,485
GFF3573
GFF3574 - Tetrathionate reductase subunit B, at 332,486 to 333,220
GFF3574
GFF3575 - Tetrathionate reductase sensory transduction histidine kinase, at 333,402 to 335,180
GFF3575
Position (kb) 332
333
334 Strain fitness (log2 ratio) -1
0
1 at 331.510 kb on + strand at 331.510 kb on + strand at 331.520 kb on + strand at 331.697 kb on + strand, within GFF3573 at 331.972 kb on + strand, within GFF3573 at 332.229 kb on + strand, within GFF3573 at 332.230 kb on - strand, within GFF3573 at 332.313 kb on - strand, within GFF3573 at 332.434 kb on + strand at 332.435 kb on - strand at 332.435 kb on - strand at 332.560 kb on - strand, within GFF3574 at 332.595 kb on - strand, within GFF3574 at 332.660 kb on - strand, within GFF3574 at 332.790 kb on + strand, within GFF3574 at 332.791 kb on - strand, within GFF3574 at 333.080 kb on - strand, within GFF3574 at 333.090 kb on + strand, within GFF3574 at 333.451 kb on + strand at 333.486 kb on - strand at 333.553 kb on + strand at 333.743 kb on + strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.864 kb on + strand, within GFF3575 at 333.866 kb on + strand, within GFF3575 at 333.866 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.949 kb on - strand, within GFF3575 at 334.007 kb on + strand, within GFF3575 at 334.099 kb on - strand, within GFF3575
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 331,510 + -0.2 331,510 + +0.5 331,520 + +0.2 331,697 + GFF3573 0.23 +0.6 331,972 + GFF3573 0.50 -0.5 332,229 + GFF3573 0.75 +0.2 332,230 - GFF3573 0.75 +0.1 332,313 - GFF3573 0.83 -0.1 332,434 + +0.0 332,435 - +0.1 332,435 - +0.3 332,560 - GFF3574 0.10 +0.1 332,595 - GFF3574 0.15 +0.0 332,660 - GFF3574 0.24 -0.1 332,790 + GFF3574 0.41 +0.1 332,791 - GFF3574 0.41 +0.0 333,080 - GFF3574 0.81 +0.3 333,090 + GFF3574 0.82 +0.1 333,451 + -0.2 333,486 - +0.1 333,553 + +0.4 333,743 + GFF3575 0.19 -0.5 333,744 - GFF3575 0.19 +0.3 333,744 - GFF3575 0.19 +0.2 333,744 - GFF3575 0.19 -0.6 333,864 + GFF3575 0.26 -0.3 333,866 + GFF3575 0.26 +0.3 333,866 + GFF3575 0.26 -0.1 333,948 + GFF3575 0.31 -0.1 333,948 + GFF3575 0.31 -0.9 333,948 + GFF3575 0.31 +0.4 333,949 - GFF3575 0.31 -0.7 334,007 + GFF3575 0.34 -0.1 334,099 - GFF3575 0.39 +0.2
Or see this region's nucleotide sequence