Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF348 and GFF349 are separated by 11 nucleotides GFF349 and GFF350 are separated by 102 nucleotides
GFF348 - Xyloside transporter XynT, at 64,790 to 66,172
GFF348
GFF349 - Alpha-xylosidase (EC 3.2.1.-), at 66,184 to 68,502
GFF349
GFF350 - FIG01200701: possible membrane protein, at 68,605 to 70,284
GFF350
Position (kb) 66
67
68
69 Strain fitness (log2 ratio) -1
0
1
2
3 at 65.196 kb on + strand, within GFF348 at 65.196 kb on + strand, within GFF348 at 65.199 kb on + strand, within GFF348 at 65.221 kb on + strand, within GFF348 at 65.221 kb on + strand, within GFF348 at 65.221 kb on + strand, within GFF348 at 65.222 kb on - strand, within GFF348 at 65.432 kb on - strand, within GFF348 at 65.510 kb on - strand, within GFF348 at 65.546 kb on + strand, within GFF348 at 65.547 kb on - strand, within GFF348 at 65.547 kb on - strand, within GFF348 at 65.603 kb on + strand, within GFF348 at 65.603 kb on + strand, within GFF348 at 65.604 kb on - strand, within GFF348 at 65.778 kb on + strand, within GFF348 at 65.778 kb on + strand, within GFF348 at 66.019 kb on + strand, within GFF348 at 66.062 kb on - strand at 66.071 kb on + strand at 66.170 kb on + strand at 66.184 kb on - strand at 66.225 kb on + strand at 66.287 kb on - strand at 66.378 kb on - strand at 66.568 kb on - strand, within GFF349 at 66.628 kb on + strand, within GFF349 at 66.629 kb on - strand, within GFF349 at 66.763 kb on + strand, within GFF349 at 66.764 kb on - strand, within GFF349 at 66.764 kb on - strand, within GFF349 at 66.772 kb on - strand, within GFF349 at 66.781 kb on + strand, within GFF349 at 66.781 kb on + strand, within GFF349 at 66.782 kb on - strand, within GFF349 at 66.889 kb on + strand, within GFF349 at 66.890 kb on - strand, within GFF349 at 66.899 kb on - strand, within GFF349 at 66.944 kb on - strand, within GFF349 at 67.228 kb on + strand, within GFF349 at 67.229 kb on - strand, within GFF349 at 67.317 kb on + strand, within GFF349 at 67.375 kb on + strand, within GFF349 at 67.376 kb on - strand, within GFF349 at 67.507 kb on + strand, within GFF349 at 67.514 kb on - strand, within GFF349 at 67.633 kb on + strand, within GFF349 at 67.835 kb on - strand, within GFF349 at 67.897 kb on + strand, within GFF349 at 68.040 kb on - strand, within GFF349 at 68.181 kb on + strand, within GFF349 at 68.182 kb on - strand, within GFF349 at 68.182 kb on - strand, within GFF349 at 68.187 kb on - strand, within GFF349 at 68.403 kb on + strand at 68.403 kb on + strand at 68.459 kb on + strand at 68.460 kb on - strand at 68.460 kb on - strand at 68.494 kb on - strand at 68.500 kb on + strand at 68.546 kb on + strand at 68.629 kb on - strand at 68.671 kb on + strand at 68.702 kb on - strand at 68.745 kb on + strand at 68.770 kb on - strand at 68.815 kb on + strand, within GFF350 at 68.830 kb on + strand, within GFF350 at 69.206 kb on - strand, within GFF350 at 69.231 kb on + strand, within GFF350 at 69.232 kb on - strand, within GFF350 at 69.233 kb on + strand, within GFF350
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 65,196 + GFF348 0.29 +0.1 65,196 + GFF348 0.29 -0.3 65,199 + GFF348 0.30 +0.8 65,221 + GFF348 0.31 -0.7 65,221 + GFF348 0.31 -0.1 65,221 + GFF348 0.31 -0.0 65,222 - GFF348 0.31 +1.1 65,432 - GFF348 0.46 -0.2 65,510 - GFF348 0.52 +0.2 65,546 + GFF348 0.55 -0.2 65,547 - GFF348 0.55 -1.6 65,547 - GFF348 0.55 +0.4 65,603 + GFF348 0.59 +0.1 65,603 + GFF348 0.59 -0.1 65,604 - GFF348 0.59 -0.2 65,778 + GFF348 0.71 -0.2 65,778 + GFF348 0.71 -1.1 66,019 + GFF348 0.89 +0.9 66,062 - -0.3 66,071 + +0.1 66,170 + -0.0 66,184 - +0.3 66,225 + +0.2 66,287 - +2.2 66,378 - +0.0 66,568 - GFF349 0.17 -0.2 66,628 + GFF349 0.19 -0.6 66,629 - GFF349 0.19 +0.3 66,763 + GFF349 0.25 -0.2 66,764 - GFF349 0.25 -0.2 66,764 - GFF349 0.25 -0.8 66,772 - GFF349 0.25 -1.6 66,781 + GFF349 0.26 -0.9 66,781 + GFF349 0.26 -1.2 66,782 - GFF349 0.26 +0.3 66,889 + GFF349 0.30 +0.7 66,890 - GFF349 0.30 -0.2 66,899 - GFF349 0.31 -1.6 66,944 - GFF349 0.33 +0.6 67,228 + GFF349 0.45 +0.0 67,229 - GFF349 0.45 -0.4 67,317 + GFF349 0.49 +0.3 67,375 + GFF349 0.51 +0.3 67,376 - GFF349 0.51 -0.0 67,507 + GFF349 0.57 +0.5 67,514 - GFF349 0.57 -0.2 67,633 + GFF349 0.62 +0.2 67,835 - GFF349 0.71 -0.4 67,897 + GFF349 0.74 -0.1 68,040 - GFF349 0.80 -0.1 68,181 + GFF349 0.86 +0.7 68,182 - GFF349 0.86 +0.2 68,182 - GFF349 0.86 -0.5 68,187 - GFF349 0.86 +0.4 68,403 + -0.0 68,403 + -0.1 68,459 + -0.2 68,460 - +0.1 68,460 - -0.8 68,494 - -0.2 68,500 + -0.3 68,546 + +0.9 68,629 - -0.3 68,671 + +3.0 68,702 - -1.1 68,745 + -0.7 68,770 - +0.1 68,815 + GFF350 0.12 -0.1 68,830 + GFF350 0.13 +0.5 69,206 - GFF350 0.36 -0.3 69,231 + GFF350 0.37 +1.2 69,232 - GFF350 0.37 +0.1 69,233 + GFF350 0.37 -0.2
Or see this region's nucleotide sequence