Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3440 and GFF3441 overlap by 1 nucleotides GFF3441 and GFF3442 overlap by 11 nucleotides GFF3442 and GFF3443 overlap by 7 nucleotides GFF3443 and GFF3444 overlap by 7 nucleotides
GFF3440 - Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3), at 201,175 to 202,809
GFF3440
GFF3441 - Nickel transport system permease protein nikB2 (TC 3.A.1.5.3), at 202,809 to 203,783
GFF3441
GFF3442 - Nickel transport system permease protein nikC2 (TC 3.A.1.5.3), at 203,773 to 204,585
GFF3442
GFF3443 - Nickel transport ATP-binding protein nikD2 (TC 3.A.1.5.3), at 204,579 to 205,376
GFF3443
GFF3444 - Nickel transport ATP-binding protein nikE2 (TC 3.A.1.5.3), at 205,370 to 205,960
GFF3444
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1 at 202.886 kb on + strand at 202.920 kb on - strand, within GFF3441 at 203.227 kb on + strand, within GFF3441 at 203.228 kb on - strand, within GFF3441 at 203.297 kb on - strand, within GFF3441 at 203.384 kb on - strand, within GFF3441 at 203.392 kb on + strand, within GFF3441 at 203.393 kb on - strand, within GFF3441 at 203.510 kb on - strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.525 kb on - strand, within GFF3441 at 203.554 kb on + strand, within GFF3441 at 203.689 kb on + strand at 203.701 kb on + strand at 203.701 kb on + strand at 203.702 kb on - strand at 203.705 kb on - strand at 203.705 kb on - strand at 203.821 kb on - strand at 203.951 kb on + strand, within GFF3442 at 204.293 kb on - strand, within GFF3442 at 204.491 kb on + strand, within GFF3442 at 204.503 kb on + strand, within GFF3442 at 204.655 kb on + strand at 204.788 kb on + strand, within GFF3443 at 204.818 kb on + strand, within GFF3443 at 204.818 kb on + strand, within GFF3443 at 204.819 kb on - strand, within GFF3443 at 204.819 kb on - strand, within GFF3443 at 204.849 kb on - strand, within GFF3443 at 204.965 kb on - strand, within GFF3443 at 204.968 kb on - strand, within GFF3443 at 205.077 kb on + strand, within GFF3443 at 205.077 kb on + strand, within GFF3443 at 205.078 kb on - strand, within GFF3443 at 205.080 kb on - strand, within GFF3443 at 205.245 kb on + strand, within GFF3443 at 205.246 kb on - strand, within GFF3443 at 205.246 kb on - strand, within GFF3443 at 205.248 kb on - strand, within GFF3443 at 205.334 kb on - strand at 205.366 kb on + strand at 205.366 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 202,886 + -0.2 202,920 - GFF3441 0.11 -0.1 203,227 + GFF3441 0.43 +0.0 203,228 - GFF3441 0.43 +1.7 203,297 - GFF3441 0.50 +0.2 203,384 - GFF3441 0.59 +0.2 203,392 + GFF3441 0.60 +0.2 203,393 - GFF3441 0.60 -0.2 203,510 - GFF3441 0.72 -0.2 203,524 + GFF3441 0.73 -0.1 203,524 + GFF3441 0.73 +1.6 203,524 + GFF3441 0.73 -0.0 203,524 + GFF3441 0.73 -0.7 203,525 - GFF3441 0.73 +0.1 203,554 + GFF3441 0.76 +0.2 203,689 + -0.6 203,701 + +0.1 203,701 + +0.2 203,702 - +0.3 203,705 - +0.3 203,705 - -1.3 203,821 - +0.3 203,951 + GFF3442 0.22 -0.3 204,293 - GFF3442 0.64 -0.3 204,491 + GFF3442 0.88 -1.0 204,503 + GFF3442 0.90 +0.5 204,655 + -0.4 204,788 + GFF3443 0.26 +0.1 204,818 + GFF3443 0.30 +0.2 204,818 + GFF3443 0.30 -0.0 204,819 - GFF3443 0.30 +0.4 204,819 - GFF3443 0.30 +0.5 204,849 - GFF3443 0.34 -0.0 204,965 - GFF3443 0.48 +0.9 204,968 - GFF3443 0.49 -0.9 205,077 + GFF3443 0.62 -1.3 205,077 + GFF3443 0.62 +0.3 205,078 - GFF3443 0.63 -0.0 205,080 - GFF3443 0.63 +1.1 205,245 + GFF3443 0.83 +0.1 205,246 - GFF3443 0.84 -0.1 205,246 - GFF3443 0.84 -0.2 205,248 - GFF3443 0.84 -0.1 205,334 - +0.0 205,366 + +0.5 205,366 + -0.1
Or see this region's nucleotide sequence