Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3377 and GFF3378 are separated by 123 nucleotides GFF3378 and GFF3379 are separated by 2 nucleotides
GFF3377 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41), at 142,523 to 143,728
GFF3377
GFF3378 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 143,852 to 144,661
GFF3378
GFF3379 - FIG004453: protein YceG like, at 144,664 to 145,686
GFF3379
Position (kb) 143
144
145 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 142.931 kb on - strand, within GFF3377 at 142.931 kb on - strand, within GFF3377 at 142.937 kb on + strand, within GFF3377 at 142.937 kb on + strand, within GFF3377 at 142.938 kb on - strand, within GFF3377 at 143.085 kb on + strand, within GFF3377 at 143.288 kb on + strand, within GFF3377 at 143.288 kb on + strand, within GFF3377 at 143.294 kb on - strand, within GFF3377 at 143.533 kb on - strand, within GFF3377 at 143.533 kb on - strand, within GFF3377 at 143.539 kb on + strand, within GFF3377 at 143.698 kb on + strand at 143.726 kb on + strand at 143.790 kb on - strand at 143.892 kb on + strand at 144.507 kb on + strand, within GFF3378 at 144.575 kb on - strand, within GFF3378 at 144.765 kb on - strand at 144.769 kb on - strand, within GFF3379 at 144.783 kb on + strand, within GFF3379 at 144.836 kb on - strand, within GFF3379 at 145.043 kb on + strand, within GFF3379 at 145.044 kb on - strand, within GFF3379 at 145.068 kb on + strand, within GFF3379 at 145.069 kb on - strand, within GFF3379 at 145.166 kb on - strand, within GFF3379 at 145.166 kb on - strand, within GFF3379 at 145.360 kb on - strand, within GFF3379 at 145.429 kb on + strand, within GFF3379 at 145.430 kb on - strand, within GFF3379 at 145.430 kb on - strand, within GFF3379 at 145.430 kb on - strand, within GFF3379 at 145.431 kb on + strand, within GFF3379 at 145.484 kb on - strand, within GFF3379 at 145.485 kb on + strand, within GFF3379
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 142,931 - GFF3377 0.34 -1.0 142,931 - GFF3377 0.34 -1.3 142,937 + GFF3377 0.34 -0.4 142,937 + GFF3377 0.34 -1.2 142,938 - GFF3377 0.34 -0.2 143,085 + GFF3377 0.47 -0.4 143,288 + GFF3377 0.63 +0.4 143,288 + GFF3377 0.63 -0.6 143,294 - GFF3377 0.64 +0.3 143,533 - GFF3377 0.84 -2.1 143,533 - GFF3377 0.84 -2.2 143,539 + GFF3377 0.84 -3.6 143,698 + -1.6 143,726 + +0.0 143,790 - +0.1 143,892 + +0.3 144,507 + GFF3378 0.81 +0.3 144,575 - GFF3378 0.89 +2.0 144,765 - -0.5 144,769 - GFF3379 0.10 +0.2 144,783 + GFF3379 0.12 +0.2 144,836 - GFF3379 0.17 +0.2 145,043 + GFF3379 0.37 +0.7 145,044 - GFF3379 0.37 +0.5 145,068 + GFF3379 0.39 +0.3 145,069 - GFF3379 0.40 -0.1 145,166 - GFF3379 0.49 -0.3 145,166 - GFF3379 0.49 -0.1 145,360 - GFF3379 0.68 -0.5 145,429 + GFF3379 0.75 -0.8 145,430 - GFF3379 0.75 +0.2 145,430 - GFF3379 0.75 -0.1 145,430 - GFF3379 0.75 -0.1 145,431 + GFF3379 0.75 +0.9 145,484 - GFF3379 0.80 +0.2 145,485 + GFF3379 0.80 -0.2
Or see this region's nucleotide sequence