Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3240 and GFF3241 are separated by 14 nucleotides GFF3241 and GFF3242 are separated by 4 nucleotides
GFF3240 - COG0488: ATPase components of ABC transporters with duplicated ATPase domains, at 13,871 to 15,778
GFF3240
GFF3241 - Paraquat-inducible protein A, at 15,793 to 17,046
GFF3241
GFF3242 - Paraquat-inducible protein B, at 17,051 to 18,691
GFF3242
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -1
0
1 at 14.856 kb on + strand, within GFF3240 at 14.857 kb on - strand, within GFF3240 at 14.874 kb on + strand, within GFF3240 at 14.875 kb on - strand, within GFF3240 at 15.109 kb on - strand, within GFF3240 at 15.115 kb on + strand, within GFF3240 at 15.342 kb on + strand, within GFF3240 at 15.343 kb on - strand, within GFF3240 at 15.343 kb on - strand, within GFF3240 at 15.376 kb on + strand, within GFF3240 at 15.376 kb on + strand, within GFF3240 at 15.427 kb on + strand, within GFF3240 at 15.427 kb on + strand, within GFF3240 at 15.555 kb on + strand, within GFF3240 at 15.555 kb on + strand, within GFF3240 at 15.555 kb on + strand, within GFF3240 at 15.560 kb on + strand, within GFF3240 at 15.588 kb on + strand at 15.824 kb on + strand at 15.825 kb on - strand at 15.825 kb on - strand at 15.953 kb on - strand, within GFF3241 at 15.973 kb on - strand, within GFF3241 at 16.152 kb on - strand, within GFF3241 at 16.314 kb on + strand, within GFF3241 at 16.528 kb on + strand, within GFF3241 at 16.529 kb on - strand, within GFF3241 at 16.728 kb on + strand, within GFF3241 at 16.955 kb on + strand at 17.080 kb on - strand at 17.156 kb on + strand at 17.162 kb on + strand at 17.431 kb on + strand, within GFF3242 at 17.663 kb on - strand, within GFF3242 at 17.878 kb on + strand, within GFF3242 at 17.977 kb on + strand, within GFF3242 at 18.033 kb on + strand, within GFF3242
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 14,856 + GFF3240 0.52 -0.4 14,857 - GFF3240 0.52 -0.0 14,874 + GFF3240 0.53 -0.0 14,875 - GFF3240 0.53 +0.9 15,109 - GFF3240 0.65 +0.7 15,115 + GFF3240 0.65 -0.8 15,342 + GFF3240 0.77 -0.4 15,343 - GFF3240 0.77 +0.2 15,343 - GFF3240 0.77 -0.9 15,376 + GFF3240 0.79 -0.7 15,376 + GFF3240 0.79 +0.1 15,427 + GFF3240 0.82 -0.3 15,427 + GFF3240 0.82 -0.9 15,555 + GFF3240 0.88 +0.6 15,555 + GFF3240 0.88 +0.5 15,555 + GFF3240 0.88 +0.2 15,560 + GFF3240 0.89 -0.0 15,588 + +0.2 15,824 + +0.4 15,825 - -0.1 15,825 - +0.6 15,953 - GFF3241 0.13 +0.3 15,973 - GFF3241 0.14 -0.2 16,152 - GFF3241 0.29 -0.0 16,314 + GFF3241 0.42 +0.1 16,528 + GFF3241 0.59 -0.8 16,529 - GFF3241 0.59 -0.6 16,728 + GFF3241 0.75 -0.6 16,955 + -0.1 17,080 - +0.3 17,156 + -0.1 17,162 + +0.5 17,431 + GFF3242 0.23 +0.2 17,663 - GFF3242 0.37 +0.2 17,878 + GFF3242 0.50 +0.1 17,977 + GFF3242 0.56 +0.2 18,033 + GFF3242 0.60 +0.0
Or see this region's nucleotide sequence