Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3151 and GFF3152 are separated by 61 nucleotides GFF3152 and GFF3153 overlap by 2 nucleotides GFF3153 and GFF3154 are separated by 13 nucleotides GFF3154 and GFF3155 are separated by 66 nucleotides
GFF3151 - Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1, at 156,067 to 157,230
GFF3151
GFF3152 - Uncharacterized protein ygiD, at 157,292 to 158,080
GFF3152
GFF3153 - hypothetical protein, at 158,079 to 158,207
GFF3153
GFF3154 - Zinc transporter ZupT, at 158,221 to 158,994
GFF3154
GFF3155 - FIG01045594: hypothetical protein, at 159,061 to 159,237
GFF3155
Position (kb) 157
158
159 Strain fitness (log2 ratio) -1
0
1 at 156.520 kb on - strand, within GFF3151 at 156.572 kb on - strand, within GFF3151 at 156.641 kb on + strand, within GFF3151 at 156.687 kb on + strand, within GFF3151 at 156.687 kb on + strand, within GFF3151 at 156.962 kb on - strand, within GFF3151 at 157.021 kb on - strand, within GFF3151 at 157.108 kb on + strand, within GFF3151 at 157.108 kb on + strand, within GFF3151 at 157.204 kb on + strand at 157.228 kb on + strand at 157.315 kb on + strand at 157.316 kb on - strand at 157.316 kb on - strand at 157.319 kb on + strand at 157.319 kb on + strand at 157.321 kb on + strand at 157.386 kb on - strand, within GFF3152 at 157.386 kb on - strand, within GFF3152 at 157.452 kb on + strand, within GFF3152 at 157.453 kb on - strand, within GFF3152 at 157.475 kb on + strand, within GFF3152 at 157.475 kb on + strand, within GFF3152 at 157.542 kb on - strand, within GFF3152 at 157.543 kb on + strand, within GFF3152 at 157.577 kb on - strand, within GFF3152 at 157.583 kb on + strand, within GFF3152 at 157.675 kb on + strand, within GFF3152 at 157.730 kb on + strand, within GFF3152 at 157.731 kb on - strand, within GFF3152 at 157.855 kb on - strand, within GFF3152 at 157.930 kb on + strand, within GFF3152 at 158.065 kb on + strand at 158.066 kb on - strand at 158.122 kb on + strand, within GFF3153 at 158.123 kb on - strand, within GFF3153 at 158.175 kb on + strand, within GFF3153 at 158.228 kb on + strand at 158.667 kb on + strand, within GFF3154 at 158.829 kb on + strand, within GFF3154 at 158.913 kb on + strand, within GFF3154 at 158.923 kb on + strand at 158.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 156,520 - GFF3151 0.39 -0.5 156,572 - GFF3151 0.43 -0.9 156,641 + GFF3151 0.49 +0.2 156,687 + GFF3151 0.53 +0.8 156,687 + GFF3151 0.53 +0.2 156,962 - GFF3151 0.77 -0.3 157,021 - GFF3151 0.82 -0.9 157,108 + GFF3151 0.89 -0.5 157,108 + GFF3151 0.89 -0.3 157,204 + -0.2 157,228 + -0.1 157,315 + -0.6 157,316 - +0.4 157,316 - +0.2 157,319 + +0.1 157,319 + +0.0 157,321 + +0.7 157,386 - GFF3152 0.12 -0.2 157,386 - GFF3152 0.12 -0.2 157,452 + GFF3152 0.20 -0.0 157,453 - GFF3152 0.20 +0.2 157,475 + GFF3152 0.23 -0.0 157,475 + GFF3152 0.23 +0.0 157,542 - GFF3152 0.32 -0.3 157,543 + GFF3152 0.32 -0.3 157,577 - GFF3152 0.36 -0.2 157,583 + GFF3152 0.37 +0.3 157,675 + GFF3152 0.49 +0.3 157,730 + GFF3152 0.56 -0.1 157,731 - GFF3152 0.56 -1.5 157,855 - GFF3152 0.71 -0.4 157,930 + GFF3152 0.81 -0.4 158,065 + +0.2 158,066 - +0.4 158,122 + GFF3153 0.33 -0.3 158,123 - GFF3153 0.34 +0.3 158,175 + GFF3153 0.74 +0.7 158,228 + +0.2 158,667 + GFF3154 0.58 -0.0 158,829 + GFF3154 0.79 +0.6 158,913 + GFF3154 0.89 +0.1 158,923 + +0.2 158,940 + +0.6
Or see this region's nucleotide sequence