Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3129 and GFF3130 are separated by 487 nucleotides GFF3130 and GFF3131 are separated by 41 nucleotides GFF3131 and GFF3132 are separated by 10 nucleotides
GFF3129 - Probable Fe-S oxidoreductase family 2, at 134,073 to 136,244
GFF3129
GFF3130 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 136,732 to 137,715
GFF3130
GFF3131 - TRAP-type C4-dicarboxylate transport system, small permease component, at 137,757 to 138,239
GFF3131
GFF3132 - TRAP-type C4-dicarboxylate transport system, large permease component, at 138,250 to 139,557
GFF3132
Position (kb) 136
137
138 Strain fitness (log2 ratio) -1
0
1 at 135.972 kb on - strand, within GFF3129 at 136.041 kb on - strand at 136.081 kb on + strand at 136.236 kb on - strand at 136.291 kb on + strand at 136.293 kb on + strand at 136.293 kb on + strand at 136.335 kb on + strand at 136.336 kb on - strand at 136.718 kb on - strand at 136.873 kb on + strand, within GFF3130 at 136.873 kb on + strand, within GFF3130 at 136.874 kb on - strand, within GFF3130 at 136.917 kb on + strand, within GFF3130 at 137.039 kb on - strand, within GFF3130 at 137.041 kb on - strand, within GFF3130 at 137.087 kb on - strand, within GFF3130 at 137.093 kb on + strand, within GFF3130 at 137.374 kb on + strand, within GFF3130 at 137.506 kb on - strand, within GFF3130 at 137.572 kb on + strand, within GFF3130 at 137.573 kb on - strand, within GFF3130 at 137.698 kb on + strand at 137.710 kb on - strand at 137.714 kb on - strand at 137.753 kb on + strand at 137.753 kb on + strand at 137.753 kb on + strand at 137.808 kb on - strand, within GFF3131 at 138.038 kb on + strand, within GFF3131 at 138.216 kb on + strand at 138.248 kb on - strand at 138.264 kb on + strand at 138.305 kb on + strand at 138.324 kb on + strand at 138.368 kb on + strand at 138.648 kb on - strand, within GFF3132
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 135,972 - GFF3129 0.87 +0.1 136,041 - +0.5 136,081 + -0.1 136,236 - +0.2 136,291 + -0.2 136,293 + +0.2 136,293 + +0.1 136,335 + +0.4 136,336 - -0.3 136,718 - -0.2 136,873 + GFF3130 0.14 -0.3 136,873 + GFF3130 0.14 +0.1 136,874 - GFF3130 0.14 -0.1 136,917 + GFF3130 0.19 +1.4 137,039 - GFF3130 0.31 -1.2 137,041 - GFF3130 0.31 +1.1 137,087 - GFF3130 0.36 +0.5 137,093 + GFF3130 0.37 +0.2 137,374 + GFF3130 0.65 +0.1 137,506 - GFF3130 0.79 +0.2 137,572 + GFF3130 0.85 +0.4 137,573 - GFF3130 0.85 +0.3 137,698 + +0.5 137,710 - +0.2 137,714 - +0.5 137,753 + +0.2 137,753 + -0.1 137,753 + +1.3 137,808 - GFF3131 0.11 +0.3 138,038 + GFF3131 0.58 -0.2 138,216 + +0.2 138,248 - +0.1 138,264 + -0.9 138,305 + -0.1 138,324 + -0.3 138,368 + +0.4 138,648 - GFF3132 0.30 +0.1
Or see this region's nucleotide sequence