Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3117 and GFF3118 are separated by 6 nucleotides GFF3118 and GFF3119 overlap by 8 nucleotides GFF3119 and GFF3120 are separated by 121 nucleotides
GFF3117 - Biopolymer transport protein ExbD/TolR, at 124,712 to 125,137
GFF3117
GFF3118 - MotA/TolQ/ExbB proton channel family protein, at 125,144 to 125,878
GFF3118
GFF3119 - hypothetical protein, at 125,871 to 126,008
GFF3119
GFF3120 - Cystathionine beta-lyase (EC 4.4.1.8), at 126,130 to 127,317
GFF3120
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 124.912 kb on + strand, within GFF3117 at 124.945 kb on - strand, within GFF3117 at 124.981 kb on + strand, within GFF3117 at 125.175 kb on - strand at 125.232 kb on - strand, within GFF3118 at 125.265 kb on + strand, within GFF3118 at 125.266 kb on - strand, within GFF3118 at 125.359 kb on + strand, within GFF3118 at 125.423 kb on - strand, within GFF3118 at 125.570 kb on - strand, within GFF3118 at 125.570 kb on - strand, within GFF3118 at 125.715 kb on - strand, within GFF3118 at 125.833 kb on - strand at 125.869 kb on + strand at 125.916 kb on + strand, within GFF3119 at 125.917 kb on - strand, within GFF3119 at 125.917 kb on - strand, within GFF3119 at 125.917 kb on - strand, within GFF3119 at 125.920 kb on - strand, within GFF3119 at 125.920 kb on - strand, within GFF3119 at 125.920 kb on - strand, within GFF3119 at 125.960 kb on + strand, within GFF3119 at 125.960 kb on + strand, within GFF3119 at 125.968 kb on + strand, within GFF3119 at 125.982 kb on + strand, within GFF3119 at 126.029 kb on - strand at 126.079 kb on + strand at 126.081 kb on + strand at 126.091 kb on - strand at 126.091 kb on - strand at 126.204 kb on + strand at 126.204 kb on + strand at 126.460 kb on + strand, within GFF3120 at 126.558 kb on + strand, within GFF3120 at 126.581 kb on + strand, within GFF3120 at 126.687 kb on + strand, within GFF3120 at 126.735 kb on + strand, within GFF3120 at 126.735 kb on + strand, within GFF3120 at 126.877 kb on + strand, within GFF3120 at 126.878 kb on - strand, within GFF3120 at 126.878 kb on - strand, within GFF3120 at 126.878 kb on - strand, within GFF3120 at 126.879 kb on + strand, within GFF3120 at 126.880 kb on - strand, within GFF3120 at 126.880 kb on - strand, within GFF3120 at 126.880 kb on - strand, within GFF3120
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 124,912 + GFF3117 0.47 -0.3 124,945 - GFF3117 0.55 +0.5 124,981 + GFF3117 0.63 +0.1 125,175 - +0.2 125,232 - GFF3118 0.12 +0.2 125,265 + GFF3118 0.16 -0.4 125,266 - GFF3118 0.17 -1.8 125,359 + GFF3118 0.29 -0.6 125,423 - GFF3118 0.38 -0.2 125,570 - GFF3118 0.58 +0.5 125,570 - GFF3118 0.58 +0.3 125,715 - GFF3118 0.78 -0.5 125,833 - -0.3 125,869 + +0.4 125,916 + GFF3119 0.33 +0.5 125,917 - GFF3119 0.33 +0.0 125,917 - GFF3119 0.33 +0.7 125,917 - GFF3119 0.33 +0.2 125,920 - GFF3119 0.36 -0.0 125,920 - GFF3119 0.36 +0.2 125,920 - GFF3119 0.36 +0.0 125,960 + GFF3119 0.64 +0.2 125,960 + GFF3119 0.64 +0.1 125,968 + GFF3119 0.70 +0.2 125,982 + GFF3119 0.80 -0.1 126,029 - +0.1 126,079 + -0.0 126,081 + +0.4 126,091 - +0.1 126,091 - -0.5 126,204 + -0.8 126,204 + +0.3 126,460 + GFF3120 0.28 +0.2 126,558 + GFF3120 0.36 -0.2 126,581 + GFF3120 0.38 -0.3 126,687 + GFF3120 0.47 +0.1 126,735 + GFF3120 0.51 +0.5 126,735 + GFF3120 0.51 -0.1 126,877 + GFF3120 0.63 -0.1 126,878 - GFF3120 0.63 +0.2 126,878 - GFF3120 0.63 -2.6 126,878 - GFF3120 0.63 -0.3 126,879 + GFF3120 0.63 -0.3 126,880 - GFF3120 0.63 -0.2 126,880 - GFF3120 0.63 +0.2 126,880 - GFF3120 0.63 +0.6
Or see this region's nucleotide sequence