Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3108 and GFF3109 are separated by 7 nucleotides GFF3109 and GFF3110 overlap by 4 nucleotides GFF3110 and GFF3111 are separated by 84 nucleotides GFF3111 and GFF3112 are separated by 306 nucleotides
GFF3108 - Uptake hydrogenase small subunit precursor (EC 1.12.99.6), at 117,779 to 118,897
GFF3108
GFF3109 - FIG01046062: hypothetical protein, at 118,905 to 119,090
GFF3109
GFF3110 - FIG00638753: hypothetical protein, at 119,087 to 119,374
GFF3110
GFF3111 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 119,459 to 121,102
GFF3111
GFF3112 - Putative membrane protein, at 121,409 to 121,903
GFF3112
Position (kb) 119
120
121
122 Strain fitness (log2 ratio) -1
0
1
2
3 at 118.512 kb on + strand, within GFF3108 at 118.513 kb on - strand, within GFF3108 at 118.588 kb on + strand, within GFF3108 at 118.588 kb on + strand, within GFF3108 at 118.641 kb on + strand, within GFF3108 at 118.882 kb on + strand at 118.885 kb on + strand at 118.886 kb on - strand at 118.900 kb on + strand at 118.903 kb on - strand at 118.906 kb on + strand at 118.906 kb on + strand at 119.054 kb on - strand, within GFF3109 at 119.054 kb on - strand, within GFF3109 at 119.061 kb on + strand, within GFF3109 at 119.071 kb on + strand, within GFF3109 at 119.071 kb on + strand, within GFF3109 at 119.219 kb on - strand, within GFF3110 at 119.248 kb on + strand, within GFF3110 at 119.249 kb on - strand, within GFF3110 at 119.249 kb on - strand, within GFF3110 at 119.281 kb on + strand, within GFF3110 at 119.282 kb on - strand, within GFF3110 at 119.320 kb on - strand, within GFF3110 at 119.320 kb on - strand, within GFF3110 at 119.320 kb on - strand, within GFF3110 at 119.320 kb on - strand, within GFF3110 at 119.415 kb on + strand at 119.419 kb on + strand at 119.439 kb on - strand at 119.482 kb on + strand at 119.483 kb on - strand at 119.750 kb on - strand, within GFF3111 at 119.907 kb on - strand, within GFF3111 at 119.907 kb on - strand, within GFF3111 at 120.005 kb on - strand, within GFF3111 at 120.005 kb on - strand, within GFF3111 at 120.007 kb on + strand, within GFF3111 at 120.007 kb on + strand, within GFF3111 at 120.019 kb on + strand, within GFF3111 at 120.253 kb on + strand, within GFF3111 at 120.286 kb on + strand, within GFF3111 at 120.368 kb on + strand, within GFF3111 at 120.526 kb on + strand, within GFF3111 at 120.527 kb on - strand, within GFF3111 at 120.546 kb on + strand, within GFF3111 at 120.547 kb on - strand, within GFF3111 at 120.547 kb on - strand, within GFF3111 at 120.547 kb on - strand, within GFF3111 at 120.767 kb on - strand, within GFF3111 at 120.938 kb on + strand at 120.939 kb on - strand at 120.974 kb on - strand at 121.014 kb on + strand at 121.015 kb on - strand at 121.017 kb on - strand at 121.078 kb on + strand at 121.180 kb on - strand at 121.182 kb on - strand at 121.182 kb on - strand at 121.183 kb on + strand at 121.183 kb on + strand at 121.184 kb on - strand at 121.291 kb on - strand at 121.497 kb on - strand, within GFF3112 at 121.692 kb on - strand, within GFF3112 at 121.876 kb on - strand at 121.880 kb on + strand at 121.881 kb on - strand at 121.938 kb on - strand at 121.939 kb on + strand at 121.939 kb on + strand at 121.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 118,512 + GFF3108 0.66 -0.9 118,513 - GFF3108 0.66 -0.4 118,588 + GFF3108 0.72 +1.9 118,588 + GFF3108 0.72 -0.4 118,641 + GFF3108 0.77 +0.8 118,882 + -0.9 118,885 + +0.2 118,886 - +0.2 118,900 + -0.0 118,903 - -0.1 118,906 + -0.3 118,906 + +0.1 119,054 - GFF3109 0.80 -0.2 119,054 - GFF3109 0.80 +0.7 119,061 + GFF3109 0.84 -0.1 119,071 + GFF3109 0.89 +0.0 119,071 + GFF3109 0.89 +0.6 119,219 - GFF3110 0.46 +0.3 119,248 + GFF3110 0.56 +0.3 119,249 - GFF3110 0.56 +0.1 119,249 - GFF3110 0.56 +0.6 119,281 + GFF3110 0.67 -0.0 119,282 - GFF3110 0.68 -0.0 119,320 - GFF3110 0.81 +0.0 119,320 - GFF3110 0.81 -0.6 119,320 - GFF3110 0.81 +0.2 119,320 - GFF3110 0.81 -0.8 119,415 + -0.8 119,419 + +0.0 119,439 - +0.3 119,482 + -0.8 119,483 - -0.4 119,750 - GFF3111 0.18 +0.4 119,907 - GFF3111 0.27 +0.3 119,907 - GFF3111 0.27 -0.2 120,005 - GFF3111 0.33 +0.1 120,005 - GFF3111 0.33 -0.1 120,007 + GFF3111 0.33 +0.6 120,007 + GFF3111 0.33 +0.5 120,019 + GFF3111 0.34 +0.3 120,253 + GFF3111 0.48 +0.2 120,286 + GFF3111 0.50 +2.9 120,368 + GFF3111 0.55 -0.0 120,526 + GFF3111 0.65 -0.0 120,527 - GFF3111 0.65 -0.7 120,546 + GFF3111 0.66 +0.1 120,547 - GFF3111 0.66 +0.3 120,547 - GFF3111 0.66 +0.4 120,547 - GFF3111 0.66 +0.1 120,767 - GFF3111 0.80 +0.2 120,938 + -0.3 120,939 - +0.2 120,974 - +0.7 121,014 + +0.8 121,015 - +0.9 121,017 - +0.2 121,078 + -0.9 121,180 - +0.1 121,182 - +0.1 121,182 - -0.1 121,183 + -0.0 121,183 + -0.3 121,184 - -0.2 121,291 - +0.0 121,497 - GFF3112 0.18 +0.1 121,692 - GFF3112 0.57 +0.3 121,876 - +0.0 121,880 + -1.1 121,881 - -0.1 121,938 - +1.3 121,939 + -0.3 121,939 + -0.2 121,984 - -0.3
Or see this region's nucleotide sequence