Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3034

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3033 and GFF3034 are separated by 13 nucleotidesGFF3034 and GFF3035 are separated by 2 nucleotides GFF3033 - Malate dehydrogenase (EC 1.1.1.37), at 47,460 to 48,467 GFF3033 GFF3034 - Sorbitol dehydrogenase (EC 1.1.1.14), at 48,481 to 49,497 GFF3034 GFF3035 - D-mannonate oxidoreductase (EC 1.1.1.57), at 49,500 to 50,972 GFF3035 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1at 47.583 kb on + strand, within GFF3033at 47.593 kb on - strand, within GFF3033at 47.704 kb on + strand, within GFF3033at 47.717 kb on + strand, within GFF3033at 47.717 kb on + strand, within GFF3033at 47.840 kb on + strand, within GFF3033at 47.840 kb on + strand, within GFF3033at 47.841 kb on - strand, within GFF3033at 47.841 kb on - strand, within GFF3033at 47.874 kb on + strand, within GFF3033at 48.036 kb on - strand, within GFF3033at 48.119 kb on + strand, within GFF3033at 48.164 kb on + strand, within GFF3033at 48.304 kb on + strand, within GFF3033at 48.348 kb on - strand, within GFF3033at 48.420 kb on - strandat 48.468 kb on - strandat 48.468 kb on - strandat 48.468 kb on - strandat 48.591 kb on + strand, within GFF3034at 48.662 kb on - strand, within GFF3034at 48.783 kb on + strand, within GFF3034at 48.850 kb on - strand, within GFF3034at 48.925 kb on - strand, within GFF3034at 49.172 kb on + strand, within GFF3034at 49.173 kb on - strand, within GFF3034at 49.239 kb on + strand, within GFF3034at 49.240 kb on - strand, within GFF3034at 49.254 kb on + strand, within GFF3034at 49.255 kb on - strand, within GFF3034at 49.256 kb on + strand, within GFF3034at 49.290 kb on + strand, within GFF3034at 49.418 kb on - strandat 49.546 kb on - strandat 49.692 kb on - strand, within GFF3035at 49.734 kb on - strand, within GFF3035at 49.875 kb on - strand, within GFF3035at 49.929 kb on + strand, within GFF3035at 49.930 kb on - strand, within GFF3035at 49.930 kb on - strand, within GFF3035at 49.930 kb on - strand, within GFF3035at 49.930 kb on - strand, within GFF3035at 49.980 kb on + strand, within GFF3035at 49.989 kb on + strand, within GFF3035at 50.026 kb on + strand, within GFF3035at 50.026 kb on + strand, within GFF3035at 50.027 kb on - strand, within GFF3035at 50.031 kb on - strand, within GFF3035at 50.091 kb on - strand, within GFF3035at 50.147 kb on + strand, within GFF3035at 50.211 kb on + strand, within GFF3035at 50.411 kb on + strand, within GFF3035at 50.424 kb on + strand, within GFF3035at 50.424 kb on + strand, within GFF3035

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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47,583 + GFF3033 0.12 +0.0
47,593 - GFF3033 0.13 -1.0
47,704 + GFF3033 0.24 -0.0
47,717 + GFF3033 0.25 +0.6
47,717 + GFF3033 0.25 -0.3
47,840 + GFF3033 0.38 +0.2
47,840 + GFF3033 0.38 +0.3
47,841 - GFF3033 0.38 -0.2
47,841 - GFF3033 0.38 +0.4
47,874 + GFF3033 0.41 +0.5
48,036 - GFF3033 0.57 -0.1
48,119 + GFF3033 0.65 -0.8
48,164 + GFF3033 0.70 -0.2
48,304 + GFF3033 0.84 -0.1
48,348 - GFF3033 0.88 +0.2
48,420 - -0.3
48,468 - -0.2
48,468 - -0.1
48,468 - +0.1
48,591 + GFF3034 0.11 +0.2
48,662 - GFF3034 0.18 -0.1
48,783 + GFF3034 0.30 +0.6
48,850 - GFF3034 0.36 +0.1
48,925 - GFF3034 0.44 +1.1
49,172 + GFF3034 0.68 +0.4
49,173 - GFF3034 0.68 +1.0
49,239 + GFF3034 0.75 +0.4
49,240 - GFF3034 0.75 +0.4
49,254 + GFF3034 0.76 -1.0
49,255 - GFF3034 0.76 -0.1
49,256 + GFF3034 0.76 -0.3
49,290 + GFF3034 0.80 -0.5
49,418 - -0.0
49,546 - -0.2
49,692 - GFF3035 0.13 +1.1
49,734 - GFF3035 0.16 +0.3
49,875 - GFF3035 0.25 -0.3
49,929 + GFF3035 0.29 -0.8
49,930 - GFF3035 0.29 -0.3
49,930 - GFF3035 0.29 -0.3
49,930 - GFF3035 0.29 -1.5
49,930 - GFF3035 0.29 +0.3
49,980 + GFF3035 0.33 +0.5
49,989 + GFF3035 0.33 +0.1
50,026 + GFF3035 0.36 +0.4
50,026 + GFF3035 0.36 +0.4
50,027 - GFF3035 0.36 -0.5
50,031 - GFF3035 0.36 +0.0
50,091 - GFF3035 0.40 -0.1
50,147 + GFF3035 0.44 -0.0
50,211 + GFF3035 0.48 -0.2
50,411 + GFF3035 0.62 +0.0
50,424 + GFF3035 0.63 -0.3
50,424 + GFF3035 0.63 -0.4

Or see this region's nucleotide sequence