Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3023 and GFF3024 are separated by 25 nucleotides GFF3024 and GFF3025 are separated by 0 nucleotides GFF3025 and GFF3026 overlap by 13 nucleotides GFF3026 and GFF3027 overlap by 7 nucleotides
GFF3023 - Predicted regulator of STY3230 transporter operon, at 38,431 to 38,856
GFF3023
GFF3024 - Substrate-specific component STY3230 of queuosine-regulated ECF transporter, at 38,882 to 39,460
GFF3024
GFF3025 - Transmembrane component STY3231 of energizing module of queuosine-regulated ECF transporter, at 39,461 to 40,168
GFF3025
GFF3026 - ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter, at 40,156 to 40,833
GFF3026
GFF3027 - ATPase component STY3233 of energizing module of queuosine-regulated ECF transporter, at 40,827 to 41,483
GFF3027
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 38.514 kb on - strand, within GFF3023 at 38.541 kb on - strand, within GFF3023 at 38.730 kb on + strand, within GFF3023 at 38.731 kb on - strand, within GFF3023 at 38.745 kb on + strand, within GFF3023 at 38.842 kb on - strand at 38.882 kb on - strand at 38.932 kb on + strand at 38.944 kb on + strand, within GFF3024 at 38.945 kb on - strand, within GFF3024 at 38.945 kb on - strand, within GFF3024 at 38.945 kb on - strand, within GFF3024 at 38.946 kb on - strand, within GFF3024 at 39.009 kb on + strand, within GFF3024 at 39.013 kb on + strand, within GFF3024 at 39.061 kb on - strand, within GFF3024 at 39.208 kb on + strand, within GFF3024 at 39.209 kb on - strand, within GFF3024 at 39.348 kb on + strand, within GFF3024 at 39.349 kb on - strand, within GFF3024 at 39.368 kb on - strand, within GFF3024 at 39.421 kb on + strand at 39.459 kb on - strand at 39.486 kb on + strand at 39.546 kb on - strand, within GFF3025 at 39.605 kb on + strand, within GFF3025 at 39.606 kb on - strand, within GFF3025 at 39.606 kb on - strand, within GFF3025 at 39.651 kb on + strand, within GFF3025 at 39.652 kb on - strand, within GFF3025 at 39.732 kb on + strand, within GFF3025 at 39.733 kb on - strand, within GFF3025 at 39.765 kb on + strand, within GFF3025 at 39.765 kb on + strand, within GFF3025 at 39.766 kb on - strand, within GFF3025 at 39.766 kb on - strand, within GFF3025 at 39.776 kb on + strand, within GFF3025 at 39.777 kb on - strand, within GFF3025 at 39.777 kb on - strand, within GFF3025 at 39.840 kb on - strand, within GFF3025 at 39.944 kb on + strand, within GFF3025 at 40.087 kb on + strand, within GFF3025 at 40.095 kb on + strand, within GFF3025 at 40.156 kb on - strand at 40.161 kb on + strand at 40.161 kb on + strand at 40.162 kb on - strand at 40.349 kb on + strand, within GFF3026 at 40.350 kb on - strand, within GFF3026 at 40.430 kb on + strand, within GFF3026 at 40.610 kb on + strand, within GFF3026 at 40.611 kb on - strand, within GFF3026 at 40.709 kb on + strand, within GFF3026 at 40.889 kb on + strand at 40.890 kb on - strand at 41.140 kb on + strand, within GFF3027
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 38,514 - GFF3023 0.19 -0.7 38,541 - GFF3023 0.26 -0.1 38,730 + GFF3023 0.70 -0.4 38,731 - GFF3023 0.70 +0.1 38,745 + GFF3023 0.74 +0.5 38,842 - +0.1 38,882 - +0.1 38,932 + -1.8 38,944 + GFF3024 0.11 +0.7 38,945 - GFF3024 0.11 -0.0 38,945 - GFF3024 0.11 -0.1 38,945 - GFF3024 0.11 -0.6 38,946 - GFF3024 0.11 -0.0 39,009 + GFF3024 0.22 -0.6 39,013 + GFF3024 0.23 +0.5 39,061 - GFF3024 0.31 +2.3 39,208 + GFF3024 0.56 +0.1 39,209 - GFF3024 0.56 -0.1 39,348 + GFF3024 0.80 +1.0 39,349 - GFF3024 0.81 -0.2 39,368 - GFF3024 0.84 +0.6 39,421 + -0.5 39,459 - +0.4 39,486 + -0.1 39,546 - GFF3025 0.12 +0.2 39,605 + GFF3025 0.20 -0.5 39,606 - GFF3025 0.20 +0.3 39,606 - GFF3025 0.20 +0.1 39,651 + GFF3025 0.27 -0.0 39,652 - GFF3025 0.27 +0.4 39,732 + GFF3025 0.38 -1.3 39,733 - GFF3025 0.38 -0.7 39,765 + GFF3025 0.43 +0.2 39,765 + GFF3025 0.43 -0.2 39,766 - GFF3025 0.43 -0.4 39,766 - GFF3025 0.43 +0.1 39,776 + GFF3025 0.44 +0.5 39,777 - GFF3025 0.45 -0.8 39,777 - GFF3025 0.45 -1.1 39,840 - GFF3025 0.54 +0.7 39,944 + GFF3025 0.68 -0.9 40,087 + GFF3025 0.88 -0.0 40,095 + GFF3025 0.90 -0.1 40,156 - -0.2 40,161 + +0.2 40,161 + -0.9 40,162 - +0.1 40,349 + GFF3026 0.28 +0.2 40,350 - GFF3026 0.29 +0.3 40,430 + GFF3026 0.40 +0.2 40,610 + GFF3026 0.67 -0.2 40,611 - GFF3026 0.67 -0.4 40,709 + GFF3026 0.82 +0.8 40,889 + +0.1 40,890 - +0.3 41,140 + GFF3027 0.48 +0.3
Or see this region's nucleotide sequence