Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF30

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF28 and GFF29 are separated by 31 nucleotidesGFF29 and GFF30 overlap by 4 nucleotidesGFF30 and GFF31 are separated by 197 nucleotidesGFF31 and GFF32 are separated by 52 nucleotidesGFF32 and GFF33 are separated by 83 nucleotides GFF28 - Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion, at 6,871 to 7,401 GFF28 GFF29 - Hypothetical protein YaeJ with similarity to translation release factor, at 7,433 to 7,855 GFF29 GFF30 - YaeQ protein, at 7,852 to 8,397 GFF30 GFF31 - FIG00639395: hypothetical protein, at 8,595 to 8,795 GFF31 GFF32 - Rho-specific inhibitor of transcription termination (YaeO), at 8,848 to 9,042 GFF32 GFF33 - tRNA(Ile)-lysidine synthetase (EC 6.3.4.19), at 9,126 to 10,418 GFF33 Position (kb) 7 8 9Strain fitness (log2 ratio) -1 0 1 2at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.940 kb on + strand, within GFF28at 6.940 kb on + strand, within GFF28at 6.941 kb on - strand, within GFF28at 6.941 kb on - strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.948 kb on + strand, within GFF28at 6.948 kb on + strand, within GFF28at 6.948 kb on + strand, within GFF28at 6.949 kb on - strand, within GFF28at 7.005 kb on - strand, within GFF28at 7.008 kb on + strand, within GFF28at 7.074 kb on - strand, within GFF28at 7.140 kb on - strand, within GFF28at 7.219 kb on + strand, within GFF28at 7.339 kb on - strand, within GFF28at 7.363 kb on - strandat 7.384 kb on + strandat 7.385 kb on - strandat 7.473 kb on - strandat 7.702 kb on - strand, within GFF29at 7.762 kb on + strand, within GFF29at 7.763 kb on - strand, within GFF29at 8.078 kb on + strand, within GFF30at 8.250 kb on - strand, within GFF30at 8.373 kb on + strandat 8.445 kb on + strandat 8.511 kb on + strandat 8.512 kb on - strandat 8.512 kb on - strandat 8.513 kb on + strandat 8.513 kb on + strandat 8.513 kb on + strandat 8.513 kb on + strandat 8.513 kb on + strandat 8.514 kb on - strandat 8.514 kb on - strandat 8.526 kb on - strandat 8.551 kb on - strandat 8.604 kb on + strandat 8.617 kb on + strand, within GFF31at 8.653 kb on + strand, within GFF31at 8.658 kb on + strand, within GFF31at 8.696 kb on + strand, within GFF31at 8.781 kb on + strandat 8.800 kb on + strandat 8.825 kb on - strandat 8.829 kb on + strandat 8.830 kb on - strandat 8.859 kb on - strandat 8.938 kb on + strand, within GFF32

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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6,937 - GFF28 0.12 +2.6
6,937 - GFF28 0.12 -0.2
6,937 - GFF28 0.12 +0.9
6,937 - GFF28 0.12 +1.0
6,937 - GFF28 0.12 -0.5
6,940 + GFF28 0.13 -0.4
6,940 + GFF28 0.13 +1.1
6,941 - GFF28 0.13 +0.2
6,941 - GFF28 0.13 -0.2
6,944 + GFF28 0.14 -1.0
6,944 + GFF28 0.14 -0.3
6,944 + GFF28 0.14 +0.2
6,944 + GFF28 0.14 -0.3
6,944 + GFF28 0.14 -0.2
6,945 - GFF28 0.14 +0.0
6,945 - GFF28 0.14 -0.2
6,945 - GFF28 0.14 +0.0
6,945 - GFF28 0.14 -0.1
6,945 - GFF28 0.14 -0.5
6,945 - GFF28 0.14 -0.0
6,948 + GFF28 0.15 -0.9
6,948 + GFF28 0.15 -0.1
6,948 + GFF28 0.15 +0.2
6,949 - GFF28 0.15 +0.9
7,005 - GFF28 0.25 +0.2
7,008 + GFF28 0.26 -0.7
7,074 - GFF28 0.38 +0.0
7,140 - GFF28 0.51 +0.3
7,219 + GFF28 0.66 -1.4
7,339 - GFF28 0.88 +0.2
7,363 - -0.0
7,384 + -0.5
7,385 - +1.1
7,473 - +0.7
7,702 - GFF29 0.64 -0.1
7,762 + GFF29 0.78 +0.1
7,763 - GFF29 0.78 -0.2
8,078 + GFF30 0.41 +0.2
8,250 - GFF30 0.73 +1.0
8,373 + -0.2
8,445 + -0.2
8,511 + +0.1
8,512 - -1.0
8,512 - -0.3
8,513 + -0.1
8,513 + +0.2
8,513 + +0.1
8,513 + +0.1
8,513 + +0.0
8,514 - +1.2
8,514 - +0.2
8,526 - -0.2
8,551 - -0.2
8,604 + +0.5
8,617 + GFF31 0.11 -0.4
8,653 + GFF31 0.29 +0.2
8,658 + GFF31 0.31 -0.6
8,696 + GFF31 0.50 +0.2
8,781 + -0.0
8,800 + -0.5
8,825 - +0.2
8,829 + -0.1
8,830 - -0.9
8,859 - -0.5
8,938 + GFF32 0.46 -0.1

Or see this region's nucleotide sequence