Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2937 and GFF2938 are separated by 4 nucleotides GFF2938 and GFF2939 are separated by 7 nucleotides GFF2939 and GFF2940 are separated by 212 nucleotides
GFF2937 - Uncharacterized ABC transporter, periplasmic component YrbD, at 19,076 to 19,627
GFF2937
GFF2938 - Uncharacterized ABC transporter, permease component YrbE, at 19,632 to 20,414
GFF2938
GFF2939 - Uncharacterized ABC transporter, ATP-binding protein YrbF, at 20,422 to 21,234
GFF2939
GFF2940 - Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter, at 21,447 to 22,424
GFF2940
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 19.529 kb on - strand, within GFF2937 at 19.751 kb on - strand, within GFF2938 at 19.827 kb on - strand, within GFF2938 at 19.934 kb on + strand, within GFF2938 at 19.934 kb on + strand, within GFF2938 at 19.944 kb on + strand, within GFF2938 at 20.174 kb on - strand, within GFF2938 at 20.243 kb on + strand, within GFF2938 at 20.423 kb on + strand at 20.423 kb on + strand at 20.424 kb on - strand at 20.605 kb on - strand, within GFF2939 at 20.700 kb on + strand, within GFF2939 at 20.873 kb on - strand, within GFF2939 at 20.913 kb on - strand, within GFF2939 at 20.976 kb on + strand, within GFF2939 at 20.976 kb on + strand, within GFF2939 at 20.977 kb on - strand, within GFF2939 at 21.037 kb on + strand, within GFF2939 at 21.038 kb on - strand, within GFF2939 at 21.097 kb on - strand, within GFF2939 at 21.156 kb on + strand at 21.250 kb on - strand at 21.250 kb on - strand at 21.300 kb on + strand at 21.301 kb on - strand at 21.304 kb on + strand at 21.304 kb on + strand at 21.311 kb on + strand at 21.401 kb on - strand at 21.401 kb on - strand at 21.424 kb on + strand at 21.426 kb on + strand at 21.539 kb on + strand at 21.539 kb on + strand at 21.674 kb on + strand, within GFF2940 at 21.674 kb on + strand, within GFF2940 at 21.674 kb on + strand, within GFF2940 at 21.675 kb on - strand, within GFF2940 at 21.686 kb on + strand, within GFF2940 at 21.700 kb on + strand, within GFF2940 at 21.748 kb on + strand, within GFF2940 at 21.748 kb on + strand, within GFF2940 at 21.749 kb on - strand, within GFF2940 at 21.772 kb on + strand, within GFF2940 at 21.772 kb on + strand, within GFF2940 at 21.833 kb on + strand, within GFF2940 at 21.834 kb on - strand, within GFF2940 at 21.859 kb on + strand, within GFF2940 at 21.860 kb on - strand, within GFF2940 at 21.868 kb on + strand, within GFF2940 at 22.053 kb on + strand, within GFF2940 at 22.053 kb on + strand, within GFF2940
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 19,529 - GFF2937 0.82 +0.4 19,751 - GFF2938 0.15 +0.1 19,827 - GFF2938 0.25 -0.0 19,934 + GFF2938 0.39 +1.0 19,934 + GFF2938 0.39 -0.1 19,944 + GFF2938 0.40 +0.1 20,174 - GFF2938 0.69 -0.5 20,243 + GFF2938 0.78 -0.2 20,423 + -0.2 20,423 + +0.7 20,424 - +0.9 20,605 - GFF2939 0.23 -0.4 20,700 + GFF2939 0.34 -0.4 20,873 - GFF2939 0.55 -0.3 20,913 - GFF2939 0.60 -0.4 20,976 + GFF2939 0.68 -0.1 20,976 + GFF2939 0.68 +0.3 20,977 - GFF2939 0.68 -0.0 21,037 + GFF2939 0.76 -1.0 21,038 - GFF2939 0.76 -0.5 21,097 - GFF2939 0.83 -0.1 21,156 + -2.0 21,250 - +0.3 21,250 - +0.4 21,300 + -0.2 21,301 - +0.3 21,304 + -0.2 21,304 + +0.4 21,311 + +0.1 21,401 - +0.4 21,401 - -0.0 21,424 + +0.4 21,426 + +0.8 21,539 + -1.1 21,539 + -1.4 21,674 + GFF2940 0.23 +0.1 21,674 + GFF2940 0.23 +0.0 21,674 + GFF2940 0.23 +0.3 21,675 - GFF2940 0.23 +0.9 21,686 + GFF2940 0.24 -0.1 21,700 + GFF2940 0.26 -0.0 21,748 + GFF2940 0.31 -0.4 21,748 + GFF2940 0.31 -0.3 21,749 - GFF2940 0.31 -0.3 21,772 + GFF2940 0.33 +0.0 21,772 + GFF2940 0.33 +0.5 21,833 + GFF2940 0.39 +0.4 21,834 - GFF2940 0.40 -1.6 21,859 + GFF2940 0.42 +0.2 21,860 - GFF2940 0.42 +0.6 21,868 + GFF2940 0.43 +0.2 22,053 + GFF2940 0.62 +0.1 22,053 + GFF2940 0.62 +0.2
Or see this region's nucleotide sequence