Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2900

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2897 and GFF2898 are separated by 2 nucleotidesGFF2898 and GFF2899 overlap by 4 nucleotidesGFF2899 and GFF2900 are separated by 283 nucleotidesGFF2900 and GFF2901 are separated by 2 nucleotides GFF2897 - HTH-type transcriptional regulator IlvY, at 23,977 to 24,864 GFF2897 GFF2898 - FIG074102: hypothetical protein, at 24,867 to 25,208 GFF2898 GFF2899 - Phage-related protein, at 25,205 to 25,522 GFF2899 GFF2900 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 25,806 to 27,350 GFF2900 GFF2901 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 27,353 to 29,203 GFF2901 Position (kb) 25 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 24.876 kb on + strandat 24.915 kb on - strand, within GFF2898at 24.987 kb on - strand, within GFF2898at 24.987 kb on - strand, within GFF2898at 24.999 kb on - strand, within GFF2898at 25.056 kb on + strand, within GFF2898at 25.057 kb on - strand, within GFF2898at 25.057 kb on - strand, within GFF2898at 25.130 kb on + strand, within GFF2898at 25.240 kb on + strand, within GFF2899at 25.304 kb on - strand, within GFF2899at 25.341 kb on + strand, within GFF2899at 25.341 kb on + strand, within GFF2899at 25.342 kb on - strand, within GFF2899at 25.342 kb on - strand, within GFF2899at 25.346 kb on - strand, within GFF2899at 25.358 kb on - strand, within GFF2899at 25.484 kb on + strand, within GFF2899at 25.568 kb on - strandat 25.635 kb on + strandat 25.636 kb on - strandat 25.749 kb on + strandat 25.995 kb on - strand, within GFF2900at 25.995 kb on - strand, within GFF2900at 26.042 kb on + strand, within GFF2900at 26.044 kb on + strand, within GFF2900at 26.044 kb on + strand, within GFF2900at 26.045 kb on - strand, within GFF2900at 26.059 kb on - strand, within GFF2900at 26.089 kb on + strand, within GFF2900at 26.090 kb on - strand, within GFF2900at 26.138 kb on + strand, within GFF2900at 26.139 kb on - strand, within GFF2900at 26.375 kb on - strand, within GFF2900at 26.456 kb on - strand, within GFF2900at 26.543 kb on + strand, within GFF2900at 26.562 kb on - strand, within GFF2900at 26.562 kb on - strand, within GFF2900at 26.562 kb on - strand, within GFF2900at 26.562 kb on - strand, within GFF2900at 26.562 kb on - strand, within GFF2900at 26.564 kb on + strand, within GFF2900at 26.626 kb on - strand, within GFF2900at 27.167 kb on + strand, within GFF2900at 27.168 kb on - strand, within GFF2900at 27.173 kb on + strand, within GFF2900at 27.174 kb on - strand, within GFF2900at 27.174 kb on - strand, within GFF2900at 27.174 kb on - strand, within GFF2900at 27.174 kb on - strand, within GFF2900at 27.178 kb on - strand, within GFF2900at 27.275 kb on - strandat 27.275 kb on - strandat 27.289 kb on - strandat 27.592 kb on + strand, within GFF2901at 27.723 kb on + strand, within GFF2901at 27.841 kb on - strand, within GFF2901at 27.957 kb on + strand, within GFF2901at 27.958 kb on - strand, within GFF2901at 27.958 kb on - strand, within GFF2901at 27.964 kb on - strand, within GFF2901at 27.964 kb on - strand, within GFF2901at 28.043 kb on - strand, within GFF2901at 28.114 kb on - strand, within GFF2901at 28.114 kb on - strand, within GFF2901at 28.238 kb on - strand, within GFF2901at 28.242 kb on + strand, within GFF2901at 28.243 kb on - strand, within GFF2901at 28.268 kb on - strand, within GFF2901

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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24,876 + +0.2
24,915 - GFF2898 0.14 -0.3
24,987 - GFF2898 0.35 +0.7
24,987 - GFF2898 0.35 +0.2
24,999 - GFF2898 0.39 +1.1
25,056 + GFF2898 0.55 -0.4
25,057 - GFF2898 0.56 +0.3
25,057 - GFF2898 0.56 +0.5
25,130 + GFF2898 0.77 +0.3
25,240 + GFF2899 0.11 -0.2
25,304 - GFF2899 0.31 -0.1
25,341 + GFF2899 0.43 +0.8
25,341 + GFF2899 0.43 +0.0
25,342 - GFF2899 0.43 -0.3
25,342 - GFF2899 0.43 +0.1
25,346 - GFF2899 0.44 +0.2
25,358 - GFF2899 0.48 +0.2
25,484 + GFF2899 0.88 -0.3
25,568 - -0.1
25,635 + +0.8
25,636 - -0.4
25,749 + +0.0
25,995 - GFF2900 0.12 +0.0
25,995 - GFF2900 0.12 +0.1
26,042 + GFF2900 0.15 +0.2
26,044 + GFF2900 0.15 +0.0
26,044 + GFF2900 0.15 +0.3
26,045 - GFF2900 0.15 +0.5
26,059 - GFF2900 0.16 -0.6
26,089 + GFF2900 0.18 -0.1
26,090 - GFF2900 0.18 -0.6
26,138 + GFF2900 0.21 -0.5
26,139 - GFF2900 0.22 +0.1
26,375 - GFF2900 0.37 -0.0
26,456 - GFF2900 0.42 +1.0
26,543 + GFF2900 0.48 +1.3
26,562 - GFF2900 0.49 +0.3
26,562 - GFF2900 0.49 +0.9
26,562 - GFF2900 0.49 +1.0
26,562 - GFF2900 0.49 +0.2
26,562 - GFF2900 0.49 +0.9
26,564 + GFF2900 0.49 -0.1
26,626 - GFF2900 0.53 +0.1
27,167 + GFF2900 0.88 +1.4
27,168 - GFF2900 0.88 -0.1
27,173 + GFF2900 0.88 +0.0
27,174 - GFF2900 0.89 -0.0
27,174 - GFF2900 0.89 -0.1
27,174 - GFF2900 0.89 +0.1
27,174 - GFF2900 0.89 +1.1
27,178 - GFF2900 0.89 +0.3
27,275 - -1.1
27,275 - +0.2
27,289 - -0.1
27,592 + GFF2901 0.13 +1.3
27,723 + GFF2901 0.20 +0.0
27,841 - GFF2901 0.26 +0.7
27,957 + GFF2901 0.33 +0.3
27,958 - GFF2901 0.33 +0.2
27,958 - GFF2901 0.33 +0.1
27,964 - GFF2901 0.33 -2.1
27,964 - GFF2901 0.33 +0.5
28,043 - GFF2901 0.37 +0.2
28,114 - GFF2901 0.41 +0.4
28,114 - GFF2901 0.41 -0.1
28,238 - GFF2901 0.48 -0.0
28,242 + GFF2901 0.48 +0.1
28,243 - GFF2901 0.48 +0.1
28,268 - GFF2901 0.49 +0.1

Or see this region's nucleotide sequence