Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2897 and GFF2898 are separated by 2 nucleotides GFF2898 and GFF2899 overlap by 4 nucleotides GFF2899 and GFF2900 are separated by 283 nucleotides
GFF2897 - HTH-type transcriptional regulator IlvY, at 23,977 to 24,864
GFF2897
GFF2898 - FIG074102: hypothetical protein, at 24,867 to 25,208
GFF2898
GFF2899 - Phage-related protein, at 25,205 to 25,522
GFF2899
GFF2900 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 25,806 to 27,350
GFF2900
Position (kb) 24
25
26 Strain fitness (log2 ratio) -1
0
1 at 23.869 kb on + strand at 23.893 kb on - strand at 23.893 kb on - strand at 23.947 kb on + strand at 24.258 kb on + strand, within GFF2897 at 24.283 kb on + strand, within GFF2897 at 24.635 kb on - strand, within GFF2897 at 24.876 kb on + strand at 24.915 kb on - strand, within GFF2898 at 24.987 kb on - strand, within GFF2898 at 24.987 kb on - strand, within GFF2898 at 24.999 kb on - strand, within GFF2898 at 25.056 kb on + strand, within GFF2898 at 25.057 kb on - strand, within GFF2898 at 25.057 kb on - strand, within GFF2898 at 25.130 kb on + strand, within GFF2898 at 25.240 kb on + strand, within GFF2899 at 25.304 kb on - strand, within GFF2899 at 25.341 kb on + strand, within GFF2899 at 25.341 kb on + strand, within GFF2899 at 25.342 kb on - strand, within GFF2899 at 25.342 kb on - strand, within GFF2899 at 25.346 kb on - strand, within GFF2899 at 25.358 kb on - strand, within GFF2899 at 25.484 kb on + strand, within GFF2899 at 25.568 kb on - strand at 25.635 kb on + strand at 25.636 kb on - strand at 25.749 kb on + strand at 25.995 kb on - strand, within GFF2900 at 25.995 kb on - strand, within GFF2900 at 26.042 kb on + strand, within GFF2900 at 26.044 kb on + strand, within GFF2900 at 26.044 kb on + strand, within GFF2900 at 26.045 kb on - strand, within GFF2900 at 26.059 kb on - strand, within GFF2900 at 26.089 kb on + strand, within GFF2900 at 26.090 kb on - strand, within GFF2900 at 26.138 kb on + strand, within GFF2900 at 26.139 kb on - strand, within GFF2900
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 23,869 + -0.8 23,893 - -0.6 23,893 - +0.8 23,947 + +0.3 24,258 + GFF2897 0.32 -0.6 24,283 + GFF2897 0.34 +0.5 24,635 - GFF2897 0.74 +0.1 24,876 + +0.2 24,915 - GFF2898 0.14 -0.3 24,987 - GFF2898 0.35 +0.7 24,987 - GFF2898 0.35 +0.2 24,999 - GFF2898 0.39 +1.1 25,056 + GFF2898 0.55 -0.4 25,057 - GFF2898 0.56 +0.3 25,057 - GFF2898 0.56 +0.5 25,130 + GFF2898 0.77 +0.3 25,240 + GFF2899 0.11 -0.2 25,304 - GFF2899 0.31 -0.1 25,341 + GFF2899 0.43 +0.8 25,341 + GFF2899 0.43 +0.0 25,342 - GFF2899 0.43 -0.3 25,342 - GFF2899 0.43 +0.1 25,346 - GFF2899 0.44 +0.2 25,358 - GFF2899 0.48 +0.2 25,484 + GFF2899 0.88 -0.3 25,568 - -0.1 25,635 + +0.8 25,636 - -0.4 25,749 + +0.0 25,995 - GFF2900 0.12 +0.0 25,995 - GFF2900 0.12 +0.1 26,042 + GFF2900 0.15 +0.2 26,044 + GFF2900 0.15 +0.0 26,044 + GFF2900 0.15 +0.3 26,045 - GFF2900 0.15 +0.5 26,059 - GFF2900 0.16 -0.6 26,089 + GFF2900 0.18 -0.1 26,090 - GFF2900 0.18 -0.6 26,138 + GFF2900 0.21 -0.5 26,139 - GFF2900 0.22 +0.1
Or see this region's nucleotide sequence