Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2879 and GFF2880 overlap by 4 nucleotides GFF2880 and GFF2881 overlap by 4 nucleotides
GFF2879 - Putative ECA polymerase, at 2,714 to 4,072
GFF2879
GFF2880 - 4-alpha-L-fucosyltransferase (EC 2.4.1.-), at 4,069 to 5,148
GFF2880
GFF2881 - WzxE protein, at 5,145 to 6,395
GFF2881
Position (kb) 4
5
6 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 3.415 kb on + strand, within GFF2879 at 4.104 kb on + strand at 4.121 kb on + strand at 4.121 kb on + strand at 4.156 kb on + strand at 4.200 kb on + strand, within GFF2880 at 4.276 kb on + strand, within GFF2880 at 4.464 kb on + strand, within GFF2880 at 4.466 kb on + strand, within GFF2880 at 4.466 kb on + strand, within GFF2880 at 4.466 kb on + strand, within GFF2880 at 4.466 kb on + strand, within GFF2880 at 4.466 kb on + strand, within GFF2880 at 4.466 kb on + strand, within GFF2880 at 4.533 kb on - strand, within GFF2880 at 4.827 kb on + strand, within GFF2880 at 4.969 kb on - strand, within GFF2880 at 5.103 kb on + strand at 5.201 kb on + strand at 5.202 kb on - strand at 5.203 kb on + strand at 5.203 kb on + strand at 5.213 kb on + strand at 5.215 kb on + strand at 5.215 kb on + strand at 5.215 kb on + strand at 5.215 kb on + strand at 5.216 kb on - strand at 5.382 kb on + strand, within GFF2881 at 5.605 kb on + strand, within GFF2881 at 5.605 kb on + strand, within GFF2881 at 5.618 kb on + strand, within GFF2881 at 5.625 kb on + strand, within GFF2881 at 5.657 kb on + strand, within GFF2881 at 5.658 kb on - strand, within GFF2881 at 5.658 kb on - strand, within GFF2881 at 5.659 kb on + strand, within GFF2881 at 5.692 kb on + strand, within GFF2881 at 5.817 kb on + strand, within GFF2881 at 5.817 kb on + strand, within GFF2881 at 5.817 kb on + strand, within GFF2881 at 5.818 kb on - strand, within GFF2881 at 5.818 kb on - strand, within GFF2881 at 5.820 kb on + strand, within GFF2881 at 5.822 kb on + strand, within GFF2881 at 5.836 kb on - strand, within GFF2881 at 5.946 kb on + strand, within GFF2881 at 6.052 kb on + strand, within GFF2881 at 6.080 kb on + strand, within GFF2881 at 6.122 kb on + strand, within GFF2881 at 6.123 kb on - strand, within GFF2881 at 6.135 kb on + strand, within GFF2881
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 3,415 + GFF2879 0.52 -2.4 4,104 + -1.2 4,121 + -2.9 4,121 + -2.4 4,156 + -1.7 4,200 + GFF2880 0.12 -4.8 4,276 + GFF2880 0.19 -2.8 4,464 + GFF2880 0.37 -3.8 4,466 + GFF2880 0.37 -5.5 4,466 + GFF2880 0.37 -4.0 4,466 + GFF2880 0.37 -3.8 4,466 + GFF2880 0.37 -4.2 4,466 + GFF2880 0.37 -3.9 4,466 + GFF2880 0.37 -4.1 4,533 - GFF2880 0.43 -4.9 4,827 + GFF2880 0.70 -5.0 4,969 - GFF2880 0.83 -4.8 5,103 + -3.2 5,201 + -5.6 5,202 - -4.8 5,203 + -1.5 5,203 + -5.4 5,213 + -4.4 5,215 + -5.3 5,215 + -1.0 5,215 + -4.8 5,215 + -3.0 5,216 - -4.9 5,382 + GFF2881 0.19 -4.4 5,605 + GFF2881 0.37 -5.4 5,605 + GFF2881 0.37 -5.0 5,618 + GFF2881 0.38 -3.2 5,625 + GFF2881 0.38 -4.5 5,657 + GFF2881 0.41 -3.9 5,658 - GFF2881 0.41 -4.4 5,658 - GFF2881 0.41 -5.3 5,659 + GFF2881 0.41 -4.8 5,692 + GFF2881 0.44 -5.1 5,817 + GFF2881 0.54 -3.5 5,817 + GFF2881 0.54 -4.1 5,817 + GFF2881 0.54 -4.7 5,818 - GFF2881 0.54 -1.3 5,818 - GFF2881 0.54 -2.1 5,820 + GFF2881 0.54 -2.4 5,822 + GFF2881 0.54 -5.3 5,836 - GFF2881 0.55 -6.2 5,946 + GFF2881 0.64 -3.4 6,052 + GFF2881 0.73 -2.9 6,080 + GFF2881 0.75 -5.3 6,122 + GFF2881 0.78 -6.2 6,123 - GFF2881 0.78 -3.4 6,135 + GFF2881 0.79 -2.6
Or see this region's nucleotide sequence