Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2878

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2877 and GFF2878 are separated by 206 nucleotidesGFF2878 and GFF2879 overlap by 4 nucleotides GFF2877 - Probable transport protein YifK, at 385 to 1,770 GFF2877 GFF2878 - Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-), at 1,977 to 2,717 GFF2878 GFF2879 - Putative ECA polymerase, at 2,714 to 4,072 GFF2879 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.029 kb on - strand, within GFF2877at 1.112 kb on - strand, within GFF2877at 1.134 kb on - strand, within GFF2877at 1.287 kb on + strand, within GFF2877at 1.430 kb on + strand, within GFF2877at 1.430 kb on + strand, within GFF2877at 1.521 kb on + strand, within GFF2877at 1.521 kb on + strand, within GFF2877at 1.522 kb on - strand, within GFF2877at 1.522 kb on - strand, within GFF2877at 1.523 kb on + strand, within GFF2877at 1.825 kb on + strandat 1.826 kb on - strandat 1.894 kb on + strandat 1.923 kb on + strandat 1.940 kb on - strandat 1.979 kb on - strandat 2.036 kb on + strandat 2.131 kb on + strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.150 kb on + strand, within GFF2878at 2.151 kb on - strand, within GFF2878at 2.151 kb on - strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.154 kb on + strand, within GFF2878at 2.155 kb on - strand, within GFF2878at 2.155 kb on - strand, within GFF2878at 2.155 kb on - strand, within GFF2878at 2.290 kb on + strand, within GFF2878at 2.290 kb on + strand, within GFF2878at 2.290 kb on + strand, within GFF2878at 2.312 kb on + strand, within GFF2878at 2.481 kb on + strand, within GFF2878at 2.482 kb on - strand, within GFF2878at 2.632 kb on + strand, within GFF2878at 2.673 kb on + strandat 2.756 kb on - strandat 3.415 kb on + strand, within GFF2879

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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1,029 - GFF2877 0.46 +0.1
1,112 - GFF2877 0.52 -0.2
1,134 - GFF2877 0.54 +0.1
1,287 + GFF2877 0.65 -1.5
1,430 + GFF2877 0.75 -0.1
1,430 + GFF2877 0.75 +0.3
1,521 + GFF2877 0.82 +0.6
1,521 + GFF2877 0.82 -0.0
1,522 - GFF2877 0.82 +0.0
1,522 - GFF2877 0.82 +0.1
1,523 + GFF2877 0.82 +0.3
1,825 + +0.6
1,826 - +0.5
1,894 + +1.1
1,923 + +0.3
1,940 - +0.3
1,979 - +0.1
2,036 + -0.8
2,131 + GFF2878 0.21 -0.0
2,132 - GFF2878 0.21 -0.6
2,132 - GFF2878 0.21 -0.7
2,132 - GFF2878 0.21 -0.1
2,132 - GFF2878 0.21 -0.7
2,150 + GFF2878 0.23 +0.0
2,151 - GFF2878 0.23 -0.4
2,151 - GFF2878 0.23 -0.3
2,152 + GFF2878 0.24 -0.9
2,152 + GFF2878 0.24 -0.2
2,152 + GFF2878 0.24 +0.7
2,152 + GFF2878 0.24 -0.1
2,154 + GFF2878 0.24 -1.0
2,155 - GFF2878 0.24 -1.0
2,155 - GFF2878 0.24 -0.6
2,155 - GFF2878 0.24 -0.4
2,290 + GFF2878 0.42 -0.4
2,290 + GFF2878 0.42 -0.1
2,290 + GFF2878 0.42 -0.9
2,312 + GFF2878 0.45 -0.9
2,481 + GFF2878 0.68 -0.6
2,482 - GFF2878 0.68 -0.8
2,632 + GFF2878 0.88 -0.7
2,673 + -0.1
2,756 - +0.4
3,415 + GFF2879 0.52 -2.4

Or see this region's nucleotide sequence