Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF285

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF282 and GFF283 overlap by 2 nucleotidesGFF283 and GFF284 are separated by 257 nucleotidesGFF284 and GFF285 are separated by 109 nucleotidesGFF285 and GFF286 are separated by 189 nucleotides GFF282 - Outer membrane lipoprotein YidQ, at 2,107 to 2,367 GFF282 GFF283 - hypothetical protein, at 2,366 to 2,485 GFF283 GFF284 - 16 kDa heat shock protein A, at 2,743 to 3,162 GFF284 GFF285 - 16 kDa heat shock protein B, at 3,272 to 3,700 GFF285 GFF286 - Mediator of hyperadherence YidE, at 3,890 to 5,551 GFF286 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1at 2.336 kb on + strand, within GFF282at 2.336 kb on + strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.390 kb on - strand, within GFF283at 2.390 kb on - strand, within GFF283at 2.410 kb on + strand, within GFF283at 2.481 kb on + strandat 2.484 kb on - strandat 2.613 kb on + strandat 2.624 kb on + strandat 2.628 kb on + strandat 2.642 kb on + strandat 2.644 kb on + strandat 2.651 kb on + strandat 2.652 kb on - strandat 2.742 kb on + strandat 2.823 kb on + strand, within GFF284at 2.887 kb on + strand, within GFF284at 2.997 kb on + strand, within GFF284at 2.998 kb on - strand, within GFF284at 2.998 kb on - strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.002 kb on - strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.101 kb on - strand, within GFF284at 3.102 kb on + strand, within GFF284at 3.255 kb on + strandat 3.256 kb on - strandat 3.271 kb on + strandat 3.278 kb on - strandat 3.281 kb on + strandat 3.282 kb on - strandat 3.376 kb on + strand, within GFF285at 3.413 kb on - strand, within GFF285at 3.620 kb on - strand, within GFF285at 3.690 kb on + strandat 3.695 kb on - strandat 3.698 kb on + strandat 3.699 kb on - strandat 3.699 kb on - strandat 3.824 kb on + strandat 3.824 kb on + strandat 3.825 kb on - strandat 3.825 kb on - strandat 3.826 kb on + strandat 3.826 kb on + strandat 3.827 kb on - strandat 3.827 kb on - strandat 3.827 kb on - strandat 3.828 kb on + strandat 3.828 kb on + strandat 3.828 kb on + strandat 3.829 kb on - strandat 3.961 kb on + strandat 4.012 kb on + strandat 4.195 kb on + strand, within GFF286at 4.368 kb on - strand, within GFF286at 4.368 kb on - strand, within GFF286at 4.380 kb on - strand, within GFF286at 4.497 kb on + strand, within GFF286at 4.540 kb on + strand, within GFF286at 4.540 kb on + strand, within GFF286at 4.543 kb on + strand, within GFF286at 4.543 kb on + strand, within GFF286at 4.543 kb on + strand, within GFF286at 4.543 kb on + strand, within GFF286

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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2,336 + GFF282 0.88 -0.1
2,336 + GFF282 0.88 +0.5
2,341 - GFF282 0.90 +0.8
2,341 - GFF282 0.90 +0.4
2,341 - GFF282 0.90 -0.3
2,390 - GFF283 0.20 -1.1
2,390 - GFF283 0.20 +0.0
2,410 + GFF283 0.37 +0.3
2,481 + -0.1
2,484 - -0.4
2,613 + -0.2
2,624 + +0.7
2,628 + +0.2
2,642 + +0.8
2,644 + +0.4
2,651 + -0.5
2,652 - -0.1
2,742 + +0.5
2,823 + GFF284 0.19 +0.3
2,887 + GFF284 0.34 +0.8
2,997 + GFF284 0.60 +1.0
2,998 - GFF284 0.61 +0.0
2,998 - GFF284 0.61 +0.2
3,001 + GFF284 0.61 -1.2
3,001 + GFF284 0.61 +0.1
3,002 - GFF284 0.62 -0.1
3,039 + GFF284 0.70 +0.1
3,039 + GFF284 0.70 -0.2
3,100 + GFF284 0.85 -0.4
3,100 + GFF284 0.85 +1.1
3,101 - GFF284 0.85 +0.1
3,102 + GFF284 0.85 +0.3
3,255 + -0.4
3,256 - -0.3
3,271 + +0.6
3,278 - +0.3
3,281 + -0.2
3,282 - -0.4
3,376 + GFF285 0.24 +0.0
3,413 - GFF285 0.33 -0.5
3,620 - GFF285 0.81 -0.6
3,690 + +0.3
3,695 - +0.0
3,698 + -0.2
3,699 - +0.1
3,699 - +0.3
3,824 + -0.2
3,824 + +0.1
3,825 - +0.5
3,825 - -0.2
3,826 + +0.0
3,826 + -0.1
3,827 - +0.5
3,827 - +0.1
3,827 - -0.2
3,828 + +0.5
3,828 + -0.5
3,828 + -2.0
3,829 - -1.2
3,961 + -0.2
4,012 + -0.2
4,195 + GFF286 0.18 -0.1
4,368 - GFF286 0.29 +0.3
4,368 - GFF286 0.29 +0.2
4,380 - GFF286 0.29 -0.3
4,497 + GFF286 0.37 +0.2
4,540 + GFF286 0.39 +0.0
4,540 + GFF286 0.39 -0.1
4,543 + GFF286 0.39 -0.1
4,543 + GFF286 0.39 +0.3
4,543 + GFF286 0.39 -0.1
4,543 + GFF286 0.39 -0.7

Or see this region's nucleotide sequence