Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2812 and GFF2813 are separated by 351 nucleotides GFF2813 and GFF2814 are separated by 77 nucleotides GFF2814 and GFF2815 are separated by 49 nucleotides GFF2815 and GFF2816 are separated by 170 nucleotides
GFF2812 - hypothetical protein, at 335,200 to 335,337
GFF2812
GFF2813 - YcgN (Fragment), at 335,689 to 336,150
GFF2813
GFF2814 - FIG094199: Fumarylacetoacetate hydrolase, at 336,228 to 336,887
GFF2814
GFF2815 - Protein YcgL, at 336,937 to 337,185
GFF2815
GFF2816 - Septum site-determining protein MinC, at 337,356 to 338,063
GFF2816
Position (kb) 336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.338 kb on - strand at 335.363 kb on + strand at 335.374 kb on + strand at 335.485 kb on - strand at 335.507 kb on + strand at 335.510 kb on - strand at 335.510 kb on - strand at 335.691 kb on - strand at 335.691 kb on - strand at 335.714 kb on - strand at 335.718 kb on + strand at 335.752 kb on - strand, within GFF2813 at 335.977 kb on + strand, within GFF2813 at 336.019 kb on - strand, within GFF2813 at 336.109 kb on - strand at 336.127 kb on - strand at 336.169 kb on + strand at 336.170 kb on - strand at 336.172 kb on - strand at 336.348 kb on - strand, within GFF2814 at 336.383 kb on + strand, within GFF2814 at 336.384 kb on - strand, within GFF2814 at 336.453 kb on - strand, within GFF2814 at 336.582 kb on + strand, within GFF2814 at 336.617 kb on + strand, within GFF2814 at 336.617 kb on + strand, within GFF2814 at 336.617 kb on + strand, within GFF2814 at 336.621 kb on + strand, within GFF2814 at 336.621 kb on + strand, within GFF2814 at 336.621 kb on + strand, within GFF2814 at 336.621 kb on + strand, within GFF2814 at 337.215 kb on - strand at 337.505 kb on + strand, within GFF2816
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 335,338 - -0.0 335,363 + +0.5 335,374 + +0.3 335,485 - +0.4 335,507 + -0.0 335,510 - +0.2 335,510 - -0.1 335,691 - -0.3 335,691 - +0.6 335,714 - -0.4 335,718 + -0.1 335,752 - GFF2813 0.14 +0.2 335,977 + GFF2813 0.62 -0.2 336,019 - GFF2813 0.71 -0.0 336,109 - +0.1 336,127 - -0.1 336,169 + +0.8 336,170 - +0.1 336,172 - -0.1 336,348 - GFF2814 0.18 +0.0 336,383 + GFF2814 0.23 -0.4 336,384 - GFF2814 0.24 +1.0 336,453 - GFF2814 0.34 -0.0 336,582 + GFF2814 0.54 +1.8 336,617 + GFF2814 0.59 +0.4 336,617 + GFF2814 0.59 +0.3 336,617 + GFF2814 0.59 -1.2 336,621 + GFF2814 0.60 -2.6 336,621 + GFF2814 0.60 +0.9 336,621 + GFF2814 0.60 -0.4 336,621 + GFF2814 0.60 +0.9 337,215 - -0.4 337,505 + GFF2816 0.21 +0.2
Or see this region's nucleotide sequence