Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2788 and GFF2789 are separated by 18 nucleotides GFF2789 and GFF2790 overlap by 4 nucleotides GFF2790 and GFF2791 overlap by 11 nucleotides GFF2791 and GFF2792 overlap by 4 nucleotides
GFF2788 - Uptake hydrogenase large subunit (EC 1.12.99.6), at 311,212 to 313,005
GFF2788
GFF2789 - Ni,Fe-hydrogenase I cytochrome b subunit, at 313,024 to 313,755
GFF2789
GFF2790 - Hydrogenase maturation protease (EC 3.4.24.-), at 313,752 to 314,348
GFF2790
GFF2791 - Hydrogenase maturation factor hoxO, at 314,338 to 314,742
GFF2791
GFF2792 - Hydrogenase maturation factor HoxQ, at 314,739 to 315,587
GFF2792
Position (kb) 313
314 Strain fitness (log2 ratio) -1
0
1
2 at 312.024 kb on + strand, within GFF2788 at 312.170 kb on + strand, within GFF2788 at 312.213 kb on + strand, within GFF2788 at 312.405 kb on + strand, within GFF2788 at 313.139 kb on + strand, within GFF2789 at 313.210 kb on + strand, within GFF2789 at 313.219 kb on + strand, within GFF2789 at 313.220 kb on - strand, within GFF2789 at 313.282 kb on + strand, within GFF2789 at 313.422 kb on + strand, within GFF2789 at 313.473 kb on + strand, within GFF2789 at 313.474 kb on - strand, within GFF2789 at 313.517 kb on - strand, within GFF2789 at 313.668 kb on + strand, within GFF2789 at 313.669 kb on - strand, within GFF2789 at 313.669 kb on - strand, within GFF2789 at 313.669 kb on - strand, within GFF2789 at 313.911 kb on + strand, within GFF2790 at 313.912 kb on - strand, within GFF2790 at 314.262 kb on + strand, within GFF2790 at 314.264 kb on + strand, within GFF2790 at 314.265 kb on - strand, within GFF2790 at 314.302 kb on + strand at 314.302 kb on + strand at 314.302 kb on + strand at 314.413 kb on - strand, within GFF2791 at 314.459 kb on + strand, within GFF2791 at 314.599 kb on - strand, within GFF2791 at 314.604 kb on - strand, within GFF2791 at 314.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 312,024 + GFF2788 0.45 +0.1 312,170 + GFF2788 0.53 +1.8 312,213 + GFF2788 0.56 -0.1 312,405 + GFF2788 0.66 -0.1 313,139 + GFF2789 0.16 -0.1 313,210 + GFF2789 0.25 +0.2 313,219 + GFF2789 0.27 +1.1 313,220 - GFF2789 0.27 -0.1 313,282 + GFF2789 0.35 +0.6 313,422 + GFF2789 0.54 -1.2 313,473 + GFF2789 0.61 +1.2 313,474 - GFF2789 0.61 +0.5 313,517 - GFF2789 0.67 +0.0 313,668 + GFF2789 0.88 +0.2 313,669 - GFF2789 0.88 +0.3 313,669 - GFF2789 0.88 -0.4 313,669 - GFF2789 0.88 -0.2 313,911 + GFF2790 0.27 +0.7 313,912 - GFF2790 0.27 +0.3 314,262 + GFF2790 0.85 +0.1 314,264 + GFF2790 0.86 +0.3 314,265 - GFF2790 0.86 -0.0 314,302 + +0.0 314,302 + -0.1 314,302 + +0.6 314,413 - GFF2791 0.19 +0.1 314,459 + GFF2791 0.30 -0.4 314,599 - GFF2791 0.64 +0.1 314,604 - GFF2791 0.66 -0.1 314,736 - +0.0
Or see this region's nucleotide sequence