Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2688 and GFF2689 overlap by 4 nucleotides GFF2689 and GFF2690 overlap by 14 nucleotides GFF2690 and GFF2691 overlap by 1 nucleotides GFF2691 and GFF2692 are separated by 1 nucleotides
GFF2688 - Peptide transport periplasmic protein SapA, at 209,410 to 210,945
GFF2688
GFF2689 - Peptide transport system permease protein SapB, at 210,942 to 211,907
GFF2689
GFF2690 - Peptide transport system permease protein SapC, at 211,894 to 212,784
GFF2690
GFF2691 - Peptide transport system ATP-binding protein SapD, at 212,784 to 213,776
GFF2691
GFF2692 - Peptide transport system ATP-binding protein SapF, at 213,778 to 214,584
GFF2692
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1 at 211.487 kb on + strand, within GFF2689 at 211.559 kb on + strand, within GFF2689 at 211.581 kb on + strand, within GFF2689 at 211.782 kb on + strand, within GFF2689 at 212.226 kb on - strand, within GFF2690 at 212.414 kb on + strand, within GFF2690 at 212.666 kb on + strand, within GFF2690 at 213.051 kb on - strand, within GFF2691 at 213.051 kb on - strand, within GFF2691 at 213.478 kb on + strand, within GFF2691
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 211,487 + GFF2689 0.56 -1.0 211,559 + GFF2689 0.64 -0.9 211,581 + GFF2689 0.66 -1.2 211,782 + GFF2689 0.87 -1.2 212,226 - GFF2690 0.37 -1.8 212,414 + GFF2690 0.58 -2.7 212,666 + GFF2690 0.87 -2.3 213,051 - GFF2691 0.27 -0.6 213,051 - GFF2691 0.27 -1.4 213,478 + GFF2691 0.70 -2.3
Or see this region's nucleotide sequence