Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2667 and GFF2668 are separated by 390 nucleotides GFF2668 and GFF2669 are separated by 213 nucleotides GFF2669 and GFF2670 are separated by 203 nucleotides
GFF2667 - Right origin-binding protein, at 190,020 to 190,871
GFF2667
GFF2668 - FIG01046415: hypothetical protein, at 191,262 to 192,371
GFF2668
GFF2669 - Putative outer membrane lipoprotein, at 192,585 to 192,746
GFF2669
GFF2670 - Putative HTH-type transcriptional regulator YjgJ, TetR family, at 192,950 to 193,540
GFF2670
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1 at 190.358 kb on - strand, within GFF2667 at 191.170 kb on - strand at 191.597 kb on - strand, within GFF2668 at 191.623 kb on - strand, within GFF2668 at 191.894 kb on + strand, within GFF2668 at 191.961 kb on - strand, within GFF2668 at 191.961 kb on - strand, within GFF2668 at 192.517 kb on + strand at 192.625 kb on - strand, within GFF2669 at 192.653 kb on - strand, within GFF2669 at 192.671 kb on - strand, within GFF2669 at 192.761 kb on + strand at 192.786 kb on + strand at 192.791 kb on + strand at 192.791 kb on + strand at 192.791 kb on + strand at 192.792 kb on - strand at 192.792 kb on - strand at 192.792 kb on - strand at 192.792 kb on - strand at 192.843 kb on + strand at 192.897 kb on - strand at 193.113 kb on + strand, within GFF2670 at 193.114 kb on - strand, within GFF2670 at 193.114 kb on - strand, within GFF2670 at 193.354 kb on - strand, within GFF2670
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 190,358 - GFF2667 0.40 +0.0 191,170 - +0.9 191,597 - GFF2668 0.30 -0.3 191,623 - GFF2668 0.33 -0.2 191,894 + GFF2668 0.57 +0.6 191,961 - GFF2668 0.63 -1.8 191,961 - GFF2668 0.63 -1.2 192,517 + -0.0 192,625 - GFF2669 0.25 -0.0 192,653 - GFF2669 0.42 +0.6 192,671 - GFF2669 0.53 +0.0 192,761 + -0.2 192,786 + -0.5 192,791 + -0.6 192,791 + -0.4 192,791 + -0.7 192,792 - -0.8 192,792 - +0.1 192,792 - -0.3 192,792 - +0.5 192,843 + -0.5 192,897 - -0.6 193,113 + GFF2670 0.28 -0.1 193,114 - GFF2670 0.28 +0.4 193,114 - GFF2670 0.28 +0.1 193,354 - GFF2670 0.68 +0.1
Or see this region's nucleotide sequence