Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2580 and GFF2581 are separated by 211 nucleotides GFF2581 and GFF2582 overlap by 1 nucleotides GFF2582 and GFF2583 are separated by 4 nucleotides GFF2583 and GFF2584 are separated by 223 nucleotides
GFF2580 - Putative oxidoreductase YncB, at 102,714 to 103,751
GFF2580
GFF2581 - Putative acetyltransferase, at 103,963 to 104,478
GFF2581
GFF2582 - Putative inner membrane protein, at 104,478 to 104,927
GFF2582
GFF2583 - FIG00638150: hypothetical protein, at 104,932 to 105,165
GFF2583
GFF2584 - Putative virulence effector protein, at 105,389 to 106,708
GFF2584
Position (kb) 104
105 Strain fitness (log2 ratio) -1
0
1 at 103.561 kb on + strand, within GFF2580 at 103.592 kb on + strand, within GFF2580 at 103.593 kb on - strand, within GFF2580 at 103.593 kb on - strand, within GFF2580 at 103.593 kb on - strand, within GFF2580 at 103.593 kb on - strand, within GFF2580 at 103.593 kb on - strand, within GFF2580 at 103.594 kb on + strand, within GFF2580 at 103.594 kb on + strand, within GFF2580 at 103.595 kb on - strand, within GFF2580 at 103.627 kb on - strand, within GFF2580 at 103.785 kb on + strand at 103.785 kb on + strand at 103.848 kb on + strand at 103.925 kb on - strand at 103.942 kb on - strand at 104.016 kb on + strand, within GFF2581 at 104.030 kb on + strand, within GFF2581 at 104.030 kb on + strand, within GFF2581 at 104.030 kb on + strand, within GFF2581 at 104.030 kb on + strand, within GFF2581 at 104.031 kb on - strand, within GFF2581 at 104.035 kb on - strand, within GFF2581 at 104.105 kb on + strand, within GFF2581 at 104.197 kb on + strand, within GFF2581 at 104.351 kb on + strand, within GFF2581 at 104.371 kb on - strand, within GFF2581 at 104.544 kb on - strand, within GFF2582 at 104.546 kb on + strand, within GFF2582 at 104.556 kb on - strand, within GFF2582 at 104.588 kb on + strand, within GFF2582 at 104.620 kb on + strand, within GFF2582 at 104.642 kb on + strand, within GFF2582 at 104.643 kb on - strand, within GFF2582 at 104.926 kb on - strand at 105.041 kb on + strand, within GFF2583 at 105.166 kb on - strand at 105.210 kb on - strand at 105.210 kb on - strand at 105.211 kb on + strand at 105.211 kb on + strand at 105.266 kb on - strand at 105.292 kb on + strand at 105.293 kb on - strand at 105.428 kb on + strand at 105.720 kb on + strand, within GFF2584
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 103,561 + GFF2580 0.82 -0.1 103,592 + GFF2580 0.85 -0.3 103,593 - GFF2580 0.85 -0.4 103,593 - GFF2580 0.85 -0.7 103,593 - GFF2580 0.85 -0.0 103,593 - GFF2580 0.85 -0.0 103,593 - GFF2580 0.85 -0.3 103,594 + GFF2580 0.85 +1.0 103,594 + GFF2580 0.85 +0.1 103,595 - GFF2580 0.85 +0.1 103,627 - GFF2580 0.88 -0.4 103,785 + -0.1 103,785 + +0.0 103,848 + +1.4 103,925 - -0.8 103,942 - -0.1 104,016 + GFF2581 0.10 -0.1 104,030 + GFF2581 0.13 -0.1 104,030 + GFF2581 0.13 -0.0 104,030 + GFF2581 0.13 -0.1 104,030 + GFF2581 0.13 -0.7 104,031 - GFF2581 0.13 -0.9 104,035 - GFF2581 0.14 +0.1 104,105 + GFF2581 0.28 +0.9 104,197 + GFF2581 0.45 -0.8 104,351 + GFF2581 0.75 +0.3 104,371 - GFF2581 0.79 +0.4 104,544 - GFF2582 0.15 +1.4 104,546 + GFF2582 0.15 +0.4 104,556 - GFF2582 0.17 +0.5 104,588 + GFF2582 0.24 +0.2 104,620 + GFF2582 0.32 +0.3 104,642 + GFF2582 0.36 +0.9 104,643 - GFF2582 0.37 -1.2 104,926 - -0.1 105,041 + GFF2583 0.47 +0.2 105,166 - -0.0 105,210 - -0.4 105,210 - +0.3 105,211 + +1.0 105,211 + -0.4 105,266 - -0.2 105,292 + -0.2 105,293 - +0.2 105,428 + +1.2 105,720 + GFF2584 0.25 -0.0
Or see this region's nucleotide sequence