Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2522 and GFF2523 are separated by 5 nucleotides GFF2523 and GFF2524 are separated by 19 nucleotides GFF2524 and GFF2525 are separated by 2 nucleotides
GFF2522 - Hydrogenase maturation protease (EC 3.4.24.-), at 36,305 to 36,913
GFF2522
GFF2523 - Ni,Fe-hydrogenase I cytochrome b subunit, at 36,919 to 37,593
GFF2523
GFF2524 - Uptake hydrogenase large subunit (EC 1.12.99.6), at 37,613 to 39,415
GFF2524
GFF2525 - Uptake hydrogenase small subunit precursor (EC 1.12.99.6), at 39,418 to 40,410
GFF2525
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 36.660 kb on + strand, within GFF2522 at 36.976 kb on - strand at 36.996 kb on + strand, within GFF2523 at 36.997 kb on - strand, within GFF2523 at 37.143 kb on - strand, within GFF2523 at 37.226 kb on + strand, within GFF2523 at 37.227 kb on - strand, within GFF2523 at 37.227 kb on - strand, within GFF2523 at 37.230 kb on - strand, within GFF2523 at 37.491 kb on + strand, within GFF2523 at 37.554 kb on - strand at 37.557 kb on + strand at 37.557 kb on + strand at 37.558 kb on - strand at 37.559 kb on + strand at 37.559 kb on + strand at 37.559 kb on + strand at 37.559 kb on + strand at 37.560 kb on - strand at 37.657 kb on + strand at 37.830 kb on + strand, within GFF2524 at 37.831 kb on - strand, within GFF2524 at 37.831 kb on - strand, within GFF2524 at 38.053 kb on + strand, within GFF2524 at 38.054 kb on - strand, within GFF2524 at 38.349 kb on + strand, within GFF2524 at 38.349 kb on + strand, within GFF2524 at 38.349 kb on + strand, within GFF2524 at 38.349 kb on + strand, within GFF2524 at 38.355 kb on + strand, within GFF2524 at 38.440 kb on + strand, within GFF2524 at 38.860 kb on - strand, within GFF2524 at 38.860 kb on - strand, within GFF2524 at 39.074 kb on + strand, within GFF2524 at 39.079 kb on + strand, within GFF2524 at 39.091 kb on + strand, within GFF2524 at 39.296 kb on - strand at 39.296 kb on - strand at 39.608 kb on + strand, within GFF2525 at 39.705 kb on + strand, within GFF2525 at 39.738 kb on - strand, within GFF2525 at 39.903 kb on - strand, within GFF2525 at 39.903 kb on - strand, within GFF2525 at 39.999 kb on + strand, within GFF2525 at 40.188 kb on - strand, within GFF2525 at 40.357 kb on + strand at 40.378 kb on - strand at 40.392 kb on - strand at 40.397 kb on - strand at 40.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 36,660 + GFF2522 0.58 -1.8 36,976 - -0.0 36,996 + GFF2523 0.11 -0.3 36,997 - GFF2523 0.12 -0.5 37,143 - GFF2523 0.33 -0.8 37,226 + GFF2523 0.45 -0.7 37,227 - GFF2523 0.46 +0.6 37,227 - GFF2523 0.46 -0.0 37,230 - GFF2523 0.46 +0.4 37,491 + GFF2523 0.85 +0.3 37,554 - -0.1 37,557 + -0.5 37,557 + +0.6 37,558 - -0.0 37,559 + +0.4 37,559 + -0.3 37,559 + -0.3 37,559 + +0.4 37,560 - -0.4 37,657 + +0.6 37,830 + GFF2524 0.12 +0.0 37,831 - GFF2524 0.12 +0.5 37,831 - GFF2524 0.12 -0.4 38,053 + GFF2524 0.24 -1.1 38,054 - GFF2524 0.24 -1.4 38,349 + GFF2524 0.41 +0.4 38,349 + GFF2524 0.41 -0.3 38,349 + GFF2524 0.41 +0.2 38,349 + GFF2524 0.41 -0.4 38,355 + GFF2524 0.41 -1.0 38,440 + GFF2524 0.46 -0.5 38,860 - GFF2524 0.69 -0.4 38,860 - GFF2524 0.69 -0.1 39,074 + GFF2524 0.81 +0.1 39,079 + GFF2524 0.81 -0.3 39,091 + GFF2524 0.82 +0.1 39,296 - +0.2 39,296 - +0.0 39,608 + GFF2525 0.19 -0.8 39,705 + GFF2525 0.29 -0.4 39,738 - GFF2525 0.32 +0.0 39,903 - GFF2525 0.49 +0.5 39,903 - GFF2525 0.49 +0.4 39,999 + GFF2525 0.59 +0.2 40,188 - GFF2525 0.78 +0.3 40,357 + +0.1 40,378 - -0.7 40,392 - -0.1 40,397 - -0.7 40,397 - -0.2
Or see this region's nucleotide sequence