Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2475

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2473 and GFF2474 are separated by 11 nucleotidesGFF2474 and GFF2475 overlap by 4 nucleotidesGFF2475 and GFF2476 are separated by 216 nucleotides GFF2473 - DNA recombination and repair protein RecO, at 91,670 to 92,398 GFF2473 GFF2474 - GTP-binding protein Era, at 92,410 to 93,315 GFF2474 GFF2475 - Ribonuclease III (EC 3.1.26.3), at 93,312 to 94,049 GFF2475 GFF2476 - Signal peptidase I (EC 3.4.21.89), at 94,266 to 95,240 GFF2476 Position (kb) 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1at 92.423 kb on - strandat 92.423 kb on - strandat 93.473 kb on - strand, within GFF2475at 93.759 kb on - strand, within GFF2475at 93.824 kb on - strand, within GFF2475at 94.046 kb on - strandat 94.046 kb on - strandat 94.158 kb on - strandat 94.163 kb on - strandat 94.213 kb on + strandat 94.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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92,423 - +0.1
92,423 - +0.4
93,473 - GFF2475 0.22 -3.5
93,759 - GFF2475 0.61 -1.5
93,824 - GFF2475 0.69 -2.8
94,046 - +0.2
94,046 - -0.4
94,158 - -0.4
94,163 - -0.6
94,213 + +0.4
94,274 + -0.1

Or see this region's nucleotide sequence