Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2457 and GFF2458 are separated by 307 nucleotides GFF2458 and GFF2459 are separated by 258 nucleotides GFF2459 and GFF2460 are separated by 113 nucleotides GFF2460 and GFF2461 are separated by 4 nucleotides
GFF2457 - Putative sensor-like histidine kinase YfhK, at 74,659 to 76,044
GFF2457
GFF2458 - hypothetical protein, at 76,352 to 76,480
GFF2458
GFF2459 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 76,739 to 80,626
GFF2459
GFF2460 - hypothetical protein, at 80,740 to 80,877
GFF2460
GFF2461 - Transglycosylase, Slt family, at 80,882 to 82,426
GFF2461
Position (kb) 76
77
78
79
80
81 Strain fitness (log2 ratio) -2
-1
0
1 at 75.759 kb on - strand, within GFF2457 at 75.765 kb on + strand, within GFF2457 at 75.765 kb on + strand, within GFF2457 at 75.765 kb on + strand, within GFF2457 at 75.817 kb on - strand, within GFF2457 at 75.830 kb on + strand, within GFF2457 at 75.831 kb on - strand, within GFF2457 at 75.875 kb on + strand, within GFF2457 at 76.147 kb on - strand at 76.229 kb on + strand at 76.230 kb on - strand at 76.230 kb on - strand at 76.289 kb on - strand at 76.313 kb on - strand at 76.581 kb on - strand at 76.654 kb on + strand at 76.655 kb on - strand at 76.930 kb on - strand at 77.111 kb on + strand at 77.111 kb on + strand at 77.153 kb on + strand, within GFF2459 at 77.529 kb on + strand, within GFF2459 at 77.531 kb on - strand, within GFF2459 at 77.551 kb on + strand, within GFF2459 at 77.709 kb on - strand, within GFF2459 at 78.314 kb on - strand, within GFF2459 at 78.437 kb on - strand, within GFF2459 at 78.559 kb on - strand, within GFF2459 at 78.857 kb on - strand, within GFF2459 at 78.907 kb on - strand, within GFF2459 at 78.976 kb on - strand, within GFF2459 at 79.370 kb on - strand, within GFF2459 at 79.370 kb on - strand, within GFF2459 at 79.553 kb on - strand, within GFF2459 at 79.553 kb on - strand, within GFF2459 at 79.739 kb on - strand, within GFF2459 at 79.861 kb on - strand, within GFF2459 at 79.861 kb on - strand, within GFF2459 at 79.875 kb on + strand, within GFF2459 at 79.876 kb on - strand, within GFF2459 at 79.876 kb on - strand, within GFF2459 at 80.007 kb on + strand, within GFF2459 at 80.008 kb on - strand, within GFF2459 at 80.114 kb on + strand, within GFF2459 at 80.224 kb on + strand, within GFF2459 at 80.293 kb on - strand at 80.432 kb on - strand at 80.445 kb on + strand at 80.517 kb on + strand at 80.518 kb on - strand at 80.518 kb on - strand at 80.528 kb on + strand at 80.531 kb on - strand at 80.531 kb on - strand at 80.575 kb on + strand at 80.626 kb on + strand at 80.642 kb on + strand at 80.681 kb on - strand at 80.683 kb on - strand at 80.683 kb on - strand at 81.047 kb on + strand, within GFF2461 at 81.111 kb on - strand, within GFF2461 at 81.111 kb on - strand, within GFF2461 at 81.254 kb on + strand, within GFF2461 at 81.254 kb on + strand, within GFF2461 at 81.254 kb on + strand, within GFF2461 at 81.338 kb on - strand, within GFF2461 at 81.338 kb on - strand, within GFF2461 at 81.338 kb on - strand, within GFF2461 at 81.599 kb on - strand, within GFF2461
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 75,759 - GFF2457 0.79 -0.0 75,765 + GFF2457 0.80 +0.4 75,765 + GFF2457 0.80 -0.2 75,765 + GFF2457 0.80 -0.1 75,817 - GFF2457 0.84 +0.7 75,830 + GFF2457 0.84 +0.0 75,831 - GFF2457 0.85 -0.0 75,875 + GFF2457 0.88 -0.7 76,147 - -0.9 76,229 + +0.3 76,230 - -0.1 76,230 - +0.3 76,289 - +0.2 76,313 - +0.3 76,581 - -0.7 76,654 + +0.0 76,655 - +0.1 76,930 - +0.1 77,111 + -1.0 77,111 + -0.5 77,153 + GFF2459 0.11 -0.3 77,529 + GFF2459 0.20 -1.2 77,531 - GFF2459 0.20 +0.3 77,551 + GFF2459 0.21 -0.9 77,709 - GFF2459 0.25 -0.2 78,314 - GFF2459 0.41 -1.5 78,437 - GFF2459 0.44 -1.3 78,559 - GFF2459 0.47 -2.4 78,857 - GFF2459 0.54 +0.8 78,907 - GFF2459 0.56 +0.5 78,976 - GFF2459 0.58 -1.2 79,370 - GFF2459 0.68 -0.4 79,370 - GFF2459 0.68 -0.7 79,553 - GFF2459 0.72 -0.8 79,553 - GFF2459 0.72 +0.1 79,739 - GFF2459 0.77 +0.2 79,861 - GFF2459 0.80 -0.3 79,861 - GFF2459 0.80 -0.7 79,875 + GFF2459 0.81 -0.3 79,876 - GFF2459 0.81 -0.6 79,876 - GFF2459 0.81 -0.1 80,007 + GFF2459 0.84 +0.8 80,008 - GFF2459 0.84 +0.1 80,114 + GFF2459 0.87 -2.1 80,224 + GFF2459 0.90 +0.2 80,293 - -0.3 80,432 - -0.4 80,445 + +1.3 80,517 + -1.0 80,518 - -0.2 80,518 - -0.4 80,528 + -0.5 80,531 - -0.6 80,531 - -0.1 80,575 + -0.1 80,626 + -0.3 80,642 + -2.7 80,681 - +1.0 80,683 - -0.3 80,683 - +0.5 81,047 + GFF2461 0.11 +0.0 81,111 - GFF2461 0.15 +0.3 81,111 - GFF2461 0.15 +0.2 81,254 + GFF2461 0.24 +0.1 81,254 + GFF2461 0.24 -0.2 81,254 + GFF2461 0.24 -0.8 81,338 - GFF2461 0.30 +0.3 81,338 - GFF2461 0.30 +0.3 81,338 - GFF2461 0.30 +0.2 81,599 - GFF2461 0.46 +0.1
Or see this region's nucleotide sequence