Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2442 and GFF2443 are separated by 0 nucleotides GFF2443 and GFF2444 overlap by 10 nucleotides GFF2444 and GFF2445 are separated by 95 nucleotides
GFF2442 - Anaerobic sulfite reductase subunit C (EC 1.8.1.-), at 56,804 to 57,817
GFF2442
GFF2443 - putative membrane protein, at 57,818 to 58,804
GFF2443
GFF2444 - FIG00923183: possible membrane protein YebY, at 58,795 to 59,463
GFF2444
GFF2445 - Stationary phase inducible protein CsiE, at 59,559 to 60,836
GFF2445
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1
2
3 at 56.906 kb on - strand, within GFF2442 at 57.073 kb on - strand, within GFF2442 at 57.137 kb on - strand, within GFF2442 at 57.373 kb on + strand, within GFF2442 at 57.591 kb on + strand, within GFF2442 at 57.615 kb on - strand, within GFF2442 at 57.653 kb on + strand, within GFF2442 at 57.657 kb on + strand, within GFF2442 at 57.657 kb on + strand, within GFF2442 at 57.657 kb on + strand, within GFF2442 at 57.657 kb on + strand, within GFF2442 at 57.661 kb on + strand, within GFF2442 at 57.701 kb on - strand, within GFF2442 at 57.942 kb on - strand, within GFF2443 at 58.015 kb on + strand, within GFF2443 at 58.249 kb on + strand, within GFF2443 at 58.270 kb on + strand, within GFF2443 at 58.270 kb on + strand, within GFF2443 at 58.275 kb on - strand, within GFF2443 at 58.342 kb on - strand, within GFF2443 at 58.401 kb on - strand, within GFF2443 at 58.739 kb on + strand at 58.833 kb on + strand at 58.918 kb on - strand, within GFF2444 at 58.919 kb on + strand, within GFF2444 at 58.920 kb on - strand, within GFF2444 at 58.982 kb on + strand, within GFF2444 at 58.998 kb on - strand, within GFF2444 at 59.000 kb on + strand, within GFF2444 at 59.027 kb on + strand, within GFF2444 at 59.027 kb on + strand, within GFF2444 at 59.027 kb on + strand, within GFF2444 at 59.028 kb on - strand, within GFF2444 at 59.028 kb on - strand, within GFF2444 at 59.166 kb on + strand, within GFF2444 at 59.186 kb on - strand, within GFF2444 at 59.221 kb on + strand, within GFF2444 at 59.302 kb on + strand, within GFF2444 at 59.482 kb on + strand at 59.676 kb on - strand at 59.694 kb on - strand, within GFF2445
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 56,906 - GFF2442 0.10 +0.2 57,073 - GFF2442 0.27 +0.6 57,137 - GFF2442 0.33 -0.2 57,373 + GFF2442 0.56 +0.0 57,591 + GFF2442 0.78 +0.3 57,615 - GFF2442 0.80 +0.2 57,653 + GFF2442 0.84 +0.0 57,657 + GFF2442 0.84 +0.6 57,657 + GFF2442 0.84 +0.0 57,657 + GFF2442 0.84 +0.3 57,657 + GFF2442 0.84 +0.1 57,661 + GFF2442 0.85 -0.2 57,701 - GFF2442 0.88 -0.3 57,942 - GFF2443 0.13 -0.4 58,015 + GFF2443 0.20 -0.2 58,249 + GFF2443 0.44 -1.1 58,270 + GFF2443 0.46 +0.6 58,270 + GFF2443 0.46 +0.2 58,275 - GFF2443 0.46 -0.2 58,342 - GFF2443 0.53 +0.1 58,401 - GFF2443 0.59 -0.9 58,739 + +0.6 58,833 + -1.3 58,918 - GFF2444 0.18 +0.3 58,919 + GFF2444 0.19 -1.2 58,920 - GFF2444 0.19 -0.3 58,982 + GFF2444 0.28 -0.2 58,998 - GFF2444 0.30 +1.0 59,000 + GFF2444 0.31 -0.7 59,027 + GFF2444 0.35 +0.5 59,027 + GFF2444 0.35 -0.2 59,027 + GFF2444 0.35 -0.5 59,028 - GFF2444 0.35 +3.4 59,028 - GFF2444 0.35 +1.1 59,166 + GFF2444 0.55 +1.0 59,186 - GFF2444 0.58 -0.8 59,221 + GFF2444 0.64 +0.3 59,302 + GFF2444 0.76 +0.1 59,482 + -0.2 59,676 - +0.1 59,694 - GFF2445 0.11 +2.3
Or see this region's nucleotide sequence