Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2420 and GFF2421 are separated by 0 nucleotides GFF2421 and GFF2422 are separated by 208 nucleotides
GFF2420 - Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C, at 33,931 to 36,246
GFF2420
GFF2421 - Alpha-2-macroglobulin, at 36,247 to 41,181
GFF2421
GFF2422 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 41,390 to 42,232
GFF2422
Position (kb) 36
37
38
39
40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 35.281 kb on - strand, within GFF2420 at 35.317 kb on - strand, within GFF2420 at 35.317 kb on - strand, within GFF2420 at 35.587 kb on - strand, within GFF2420 at 35.709 kb on - strand, within GFF2420 at 35.738 kb on - strand, within GFF2420 at 35.886 kb on + strand, within GFF2420 at 36.229 kb on - strand at 36.248 kb on + strand at 36.249 kb on - strand at 36.305 kb on + strand at 36.306 kb on - strand at 36.339 kb on - strand at 36.440 kb on + strand at 36.441 kb on - strand at 37.045 kb on - strand, within GFF2421 at 37.204 kb on - strand, within GFF2421 at 37.294 kb on - strand, within GFF2421 at 37.294 kb on - strand, within GFF2421 at 37.305 kb on + strand, within GFF2421 at 37.398 kb on + strand, within GFF2421 at 37.399 kb on - strand, within GFF2421 at 37.423 kb on - strand, within GFF2421 at 37.607 kb on + strand, within GFF2421 at 37.659 kb on - strand, within GFF2421 at 37.659 kb on - strand, within GFF2421 at 37.768 kb on + strand, within GFF2421 at 37.857 kb on + strand, within GFF2421 at 37.857 kb on + strand, within GFF2421 at 37.957 kb on + strand, within GFF2421 at 37.958 kb on - strand, within GFF2421 at 38.043 kb on + strand, within GFF2421 at 38.252 kb on - strand, within GFF2421 at 38.420 kb on + strand, within GFF2421 at 38.424 kb on + strand, within GFF2421 at 38.497 kb on + strand, within GFF2421 at 38.662 kb on + strand, within GFF2421 at 38.662 kb on + strand, within GFF2421 at 38.662 kb on + strand, within GFF2421 at 38.663 kb on - strand, within GFF2421 at 38.663 kb on - strand, within GFF2421 at 38.727 kb on + strand, within GFF2421 at 38.727 kb on + strand, within GFF2421 at 38.761 kb on - strand, within GFF2421 at 38.907 kb on - strand, within GFF2421 at 38.983 kb on - strand, within GFF2421 at 39.177 kb on - strand, within GFF2421 at 39.448 kb on + strand, within GFF2421 at 39.448 kb on + strand, within GFF2421 at 39.759 kb on + strand, within GFF2421 at 40.228 kb on - strand, within GFF2421 at 40.293 kb on + strand, within GFF2421 at 40.363 kb on - strand, within GFF2421 at 40.365 kb on + strand, within GFF2421 at 40.367 kb on + strand, within GFF2421 at 40.368 kb on - strand, within GFF2421 at 40.368 kb on - strand, within GFF2421 at 40.368 kb on - strand, within GFF2421 at 40.373 kb on + strand, within GFF2421 at 40.374 kb on - strand, within GFF2421 at 40.403 kb on + strand, within GFF2421 at 40.403 kb on + strand, within GFF2421 at 40.404 kb on - strand, within GFF2421 at 40.432 kb on - strand, within GFF2421 at 40.499 kb on + strand, within GFF2421 at 40.554 kb on + strand, within GFF2421 at 40.728 kb on + strand at 40.829 kb on - strand at 40.997 kb on - strand at 40.999 kb on + strand at 41.041 kb on + strand at 41.253 kb on + strand at 41.326 kb on + strand at 41.326 kb on + strand at 41.434 kb on + strand at 41.435 kb on - strand at 41.435 kb on - strand at 41.591 kb on - strand, within GFF2422 at 41.666 kb on + strand, within GFF2422 at 41.667 kb on - strand, within GFF2422 at 41.667 kb on - strand, within GFF2422 at 41.667 kb on - strand, within GFF2422 at 41.989 kb on - strand, within GFF2422
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 35,281 - GFF2420 0.58 +0.9 35,317 - GFF2420 0.60 +0.0 35,317 - GFF2420 0.60 +0.3 35,587 - GFF2420 0.72 +0.4 35,709 - GFF2420 0.77 +0.9 35,738 - GFF2420 0.78 -0.5 35,886 + GFF2420 0.84 -0.3 36,229 - -0.2 36,248 + +0.4 36,249 - +0.2 36,305 + -0.2 36,306 - +0.4 36,339 - +0.8 36,440 + +0.3 36,441 - -0.0 37,045 - GFF2421 0.16 +3.7 37,204 - GFF2421 0.19 +0.3 37,294 - GFF2421 0.21 -0.4 37,294 - GFF2421 0.21 -0.1 37,305 + GFF2421 0.21 +0.2 37,398 + GFF2421 0.23 +1.0 37,399 - GFF2421 0.23 -0.7 37,423 - GFF2421 0.24 +0.2 37,607 + GFF2421 0.28 -0.1 37,659 - GFF2421 0.29 -0.2 37,659 - GFF2421 0.29 +0.4 37,768 + GFF2421 0.31 +1.0 37,857 + GFF2421 0.33 -1.1 37,857 + GFF2421 0.33 +2.2 37,957 + GFF2421 0.35 -0.0 37,958 - GFF2421 0.35 -0.8 38,043 + GFF2421 0.36 +0.9 38,252 - GFF2421 0.41 +0.2 38,420 + GFF2421 0.44 +0.6 38,424 + GFF2421 0.44 +0.2 38,497 + GFF2421 0.46 -0.8 38,662 + GFF2421 0.49 +0.6 38,662 + GFF2421 0.49 -0.5 38,662 + GFF2421 0.49 +0.8 38,663 - GFF2421 0.49 +0.4 38,663 - GFF2421 0.49 -0.2 38,727 + GFF2421 0.50 -0.0 38,727 + GFF2421 0.50 +0.3 38,761 - GFF2421 0.51 -0.4 38,907 - GFF2421 0.54 -0.8 38,983 - GFF2421 0.55 +0.3 39,177 - GFF2421 0.59 +0.0 39,448 + GFF2421 0.65 +0.4 39,448 + GFF2421 0.65 -0.3 39,759 + GFF2421 0.71 +0.4 40,228 - GFF2421 0.81 +0.2 40,293 + GFF2421 0.82 +0.4 40,363 - GFF2421 0.83 -0.3 40,365 + GFF2421 0.83 +0.4 40,367 + GFF2421 0.83 -0.1 40,368 - GFF2421 0.84 +1.0 40,368 - GFF2421 0.84 +0.1 40,368 - GFF2421 0.84 +0.0 40,373 + GFF2421 0.84 +1.7 40,374 - GFF2421 0.84 +0.3 40,403 + GFF2421 0.84 +0.1 40,403 + GFF2421 0.84 -0.6 40,404 - GFF2421 0.84 +0.2 40,432 - GFF2421 0.85 +0.5 40,499 + GFF2421 0.86 +0.5 40,554 + GFF2421 0.87 +0.6 40,728 + -0.4 40,829 - -2.2 40,997 - +1.4 40,999 + +0.3 41,041 + +0.0 41,253 + -0.2 41,326 + -0.5 41,326 + +0.6 41,434 + +0.7 41,435 - -0.1 41,435 - +0.5 41,591 - GFF2422 0.24 +0.4 41,666 + GFF2422 0.33 +0.2 41,667 - GFF2422 0.33 +0.1 41,667 - GFF2422 0.33 +0.1 41,667 - GFF2422 0.33 +0.5 41,989 - GFF2422 0.71 +1.4
Or see this region's nucleotide sequence