Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2337 and GFF2338 overlap by 35 nucleotides GFF2338 and GFF2339 are separated by 1 nucleotides GFF2339 and GFF2340 overlap by 14 nucleotides GFF2340 and GFF2341 are separated by 160 nucleotides
GFF2337 - Pyruvate formate-lyase (EC 2.3.1.54), at 127,738 to 130,035
GFF2337
GFF2338 - Pyruvate formate-lyase activating enzyme (EC 1.97.1.4), at 130,001 to 130,879
GFF2338
GFF2339 - PTS system fructose-like IIB component 2 precursor (EC 2.7.1.69), at 130,881 to 131,234
GFF2339
GFF2340 - Transcriptional regulator, AraC family, at 131,221 to 132,072
GFF2340
GFF2341 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 132,233 to 133,966
GFF2341
Position (kb) 130
131
132 Strain fitness (log2 ratio) -1
0
1 at 129.961 kb on + strand at 130.069 kb on + strand at 130.078 kb on + strand at 130.292 kb on - strand, within GFF2338 at 130.295 kb on - strand, within GFF2338 at 130.416 kb on + strand, within GFF2338 at 130.485 kb on + strand, within GFF2338 at 130.485 kb on + strand, within GFF2338 at 130.515 kb on + strand, within GFF2338 at 130.515 kb on + strand, within GFF2338 at 130.516 kb on - strand, within GFF2338 at 130.596 kb on + strand, within GFF2338 at 130.707 kb on + strand, within GFF2338 at 130.708 kb on - strand, within GFF2338 at 130.713 kb on + strand, within GFF2338 at 130.944 kb on + strand, within GFF2339 at 130.944 kb on + strand, within GFF2339 at 130.944 kb on + strand, within GFF2339 at 130.944 kb on + strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.946 kb on + strand, within GFF2339 at 130.946 kb on + strand, within GFF2339 at 131.173 kb on + strand, within GFF2339 at 131.214 kb on - strand at 131.295 kb on + strand at 131.296 kb on - strand at 131.322 kb on - strand, within GFF2340 at 131.326 kb on - strand, within GFF2340 at 131.326 kb on - strand, within GFF2340 at 131.326 kb on - strand, within GFF2340 at 131.412 kb on + strand, within GFF2340 at 131.485 kb on - strand, within GFF2340 at 131.487 kb on - strand, within GFF2340 at 131.623 kb on + strand, within GFF2340 at 131.624 kb on - strand, within GFF2340 at 131.627 kb on - strand, within GFF2340 at 131.685 kb on + strand, within GFF2340 at 131.685 kb on + strand, within GFF2340 at 131.792 kb on - strand, within GFF2340 at 132.068 kb on + strand at 132.068 kb on + strand at 132.068 kb on + strand at 132.069 kb on - strand at 132.069 kb on - strand at 132.227 kb on + strand at 132.227 kb on + strand at 132.227 kb on + strand at 132.228 kb on - strand at 132.234 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 129,961 + +0.4 130,069 + +1.0 130,078 + +0.3 130,292 - GFF2338 0.33 -0.4 130,295 - GFF2338 0.33 -0.3 130,416 + GFF2338 0.47 +0.6 130,485 + GFF2338 0.55 +0.3 130,485 + GFF2338 0.55 +0.6 130,515 + GFF2338 0.58 +0.2 130,515 + GFF2338 0.58 -0.0 130,516 - GFF2338 0.59 -0.2 130,596 + GFF2338 0.68 +0.7 130,707 + GFF2338 0.80 -1.7 130,708 - GFF2338 0.80 -0.2 130,713 + GFF2338 0.81 +0.7 130,944 + GFF2339 0.18 +0.2 130,944 + GFF2339 0.18 -0.1 130,944 + GFF2339 0.18 +0.9 130,944 + GFF2339 0.18 +0.3 130,945 - GFF2339 0.18 +0.2 130,945 - GFF2339 0.18 -0.1 130,945 - GFF2339 0.18 -0.9 130,945 - GFF2339 0.18 +0.1 130,945 - GFF2339 0.18 -0.2 130,946 + GFF2339 0.18 +0.7 130,946 + GFF2339 0.18 -0.0 131,173 + GFF2339 0.82 +1.4 131,214 - +0.1 131,295 + +0.1 131,296 - +0.1 131,322 - GFF2340 0.12 -0.6 131,326 - GFF2340 0.12 -1.0 131,326 - GFF2340 0.12 -0.1 131,326 - GFF2340 0.12 -0.4 131,412 + GFF2340 0.22 -0.6 131,485 - GFF2340 0.31 +0.3 131,487 - GFF2340 0.31 -0.4 131,623 + GFF2340 0.47 +0.3 131,624 - GFF2340 0.47 -0.2 131,627 - GFF2340 0.48 +0.5 131,685 + GFF2340 0.54 +0.2 131,685 + GFF2340 0.54 +0.1 131,792 - GFF2340 0.67 -0.0 132,068 + +0.2 132,068 + +0.6 132,068 + +0.7 132,069 - +1.6 132,069 - -0.4 132,227 + -0.0 132,227 + +0.5 132,227 + -0.3 132,228 - -0.0 132,234 + -0.3
Or see this region's nucleotide sequence