Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2335 and GFF2336 are separated by 14 nucleotides GFF2336 and GFF2337 are separated by 98 nucleotides GFF2337 and GFF2338 overlap by 35 nucleotides GFF2338 and GFF2339 are separated by 1 nucleotides
GFF2335 - PTS system, fructose-specific IIC component, at 126,225 to 127,304
GFF2335
GFF2336 - PTS system fructose-like IIB component 1 precursor (EC 2.7.1.69), at 127,319 to 127,639
GFF2336
GFF2337 - Pyruvate formate-lyase (EC 2.3.1.54), at 127,738 to 130,035
GFF2337
GFF2338 - Pyruvate formate-lyase activating enzyme (EC 1.97.1.4), at 130,001 to 130,879
GFF2338
GFF2339 - PTS system fructose-like IIB component 2 precursor (EC 2.7.1.69), at 130,881 to 131,234
GFF2339
Position (kb) 127
128
129
130
131 Strain fitness (log2 ratio) -1
0
1 at 126.860 kb on - strand, within GFF2335 at 126.862 kb on - strand, within GFF2335 at 126.862 kb on - strand, within GFF2335 at 126.863 kb on + strand, within GFF2335 at 126.863 kb on + strand, within GFF2335 at 126.864 kb on - strand, within GFF2335 at 127.062 kb on - strand, within GFF2335 at 127.117 kb on - strand, within GFF2335 at 127.302 kb on + strand at 127.370 kb on + strand, within GFF2336 at 127.370 kb on + strand, within GFF2336 at 127.370 kb on + strand, within GFF2336 at 127.370 kb on + strand, within GFF2336 at 127.370 kb on + strand, within GFF2336 at 127.370 kb on + strand, within GFF2336 at 127.370 kb on + strand, within GFF2336 at 127.370 kb on + strand, within GFF2336 at 127.371 kb on - strand, within GFF2336 at 127.371 kb on - strand, within GFF2336 at 127.422 kb on + strand, within GFF2336 at 127.513 kb on + strand, within GFF2336 at 127.547 kb on - strand, within GFF2336 at 127.552 kb on + strand, within GFF2336 at 127.600 kb on + strand, within GFF2336 at 127.749 kb on + strand at 127.816 kb on + strand at 127.882 kb on + strand at 127.966 kb on - strand at 128.119 kb on - strand, within GFF2337 at 128.121 kb on + strand, within GFF2337 at 128.321 kb on + strand, within GFF2337 at 128.321 kb on + strand, within GFF2337 at 128.506 kb on - strand, within GFF2337 at 128.560 kb on + strand, within GFF2337 at 128.561 kb on - strand, within GFF2337 at 128.561 kb on - strand, within GFF2337 at 128.561 kb on - strand, within GFF2337 at 128.792 kb on - strand, within GFF2337 at 129.106 kb on - strand, within GFF2337 at 129.106 kb on - strand, within GFF2337 at 129.106 kb on - strand, within GFF2337 at 129.109 kb on + strand, within GFF2337 at 129.110 kb on - strand, within GFF2337 at 129.151 kb on + strand, within GFF2337 at 129.156 kb on + strand, within GFF2337 at 129.157 kb on - strand, within GFF2337 at 129.157 kb on - strand, within GFF2337 at 129.157 kb on - strand, within GFF2337 at 129.157 kb on - strand, within GFF2337 at 129.161 kb on + strand, within GFF2337 at 129.168 kb on - strand, within GFF2337 at 129.359 kb on + strand, within GFF2337 at 129.735 kb on + strand, within GFF2337 at 129.735 kb on + strand, within GFF2337 at 129.736 kb on - strand, within GFF2337 at 129.879 kb on + strand at 129.880 kb on - strand at 129.961 kb on + strand at 130.069 kb on + strand at 130.078 kb on + strand at 130.292 kb on - strand, within GFF2338 at 130.295 kb on - strand, within GFF2338 at 130.416 kb on + strand, within GFF2338 at 130.485 kb on + strand, within GFF2338 at 130.485 kb on + strand, within GFF2338 at 130.515 kb on + strand, within GFF2338 at 130.515 kb on + strand, within GFF2338 at 130.516 kb on - strand, within GFF2338 at 130.596 kb on + strand, within GFF2338 at 130.707 kb on + strand, within GFF2338 at 130.708 kb on - strand, within GFF2338 at 130.713 kb on + strand, within GFF2338 at 130.944 kb on + strand, within GFF2339 at 130.944 kb on + strand, within GFF2339 at 130.944 kb on + strand, within GFF2339 at 130.944 kb on + strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.945 kb on - strand, within GFF2339 at 130.946 kb on + strand, within GFF2339 at 130.946 kb on + strand, within GFF2339
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 126,860 - GFF2335 0.59 -0.4 126,862 - GFF2335 0.59 +0.3 126,862 - GFF2335 0.59 -0.0 126,863 + GFF2335 0.59 +0.1 126,863 + GFF2335 0.59 -0.2 126,864 - GFF2335 0.59 +0.3 127,062 - GFF2335 0.78 -0.0 127,117 - GFF2335 0.83 +0.1 127,302 + -0.1 127,370 + GFF2336 0.16 +1.1 127,370 + GFF2336 0.16 +0.3 127,370 + GFF2336 0.16 +1.0 127,370 + GFF2336 0.16 -0.0 127,370 + GFF2336 0.16 -0.1 127,370 + GFF2336 0.16 +0.6 127,370 + GFF2336 0.16 +0.2 127,370 + GFF2336 0.16 -0.2 127,371 - GFF2336 0.16 -0.1 127,371 - GFF2336 0.16 -0.6 127,422 + GFF2336 0.32 +0.2 127,513 + GFF2336 0.60 +0.5 127,547 - GFF2336 0.71 -1.1 127,552 + GFF2336 0.73 +0.3 127,600 + GFF2336 0.88 +0.5 127,749 + -0.5 127,816 + -0.3 127,882 + -0.5 127,966 - +0.5 128,119 - GFF2337 0.17 -0.1 128,121 + GFF2337 0.17 -0.2 128,321 + GFF2337 0.25 -0.9 128,321 + GFF2337 0.25 -0.1 128,506 - GFF2337 0.33 -1.6 128,560 + GFF2337 0.36 +0.3 128,561 - GFF2337 0.36 +0.0 128,561 - GFF2337 0.36 -0.1 128,561 - GFF2337 0.36 -1.0 128,792 - GFF2337 0.46 +1.4 129,106 - GFF2337 0.60 -0.6 129,106 - GFF2337 0.60 +0.5 129,106 - GFF2337 0.60 +0.0 129,109 + GFF2337 0.60 +1.1 129,110 - GFF2337 0.60 +1.3 129,151 + GFF2337 0.61 +0.4 129,156 + GFF2337 0.62 -0.1 129,157 - GFF2337 0.62 +0.8 129,157 - GFF2337 0.62 -0.1 129,157 - GFF2337 0.62 -0.0 129,157 - GFF2337 0.62 +0.1 129,161 + GFF2337 0.62 +0.3 129,168 - GFF2337 0.62 +1.4 129,359 + GFF2337 0.71 -0.1 129,735 + GFF2337 0.87 -0.6 129,735 + GFF2337 0.87 -0.4 129,736 - GFF2337 0.87 +0.3 129,879 + +0.1 129,880 - +0.2 129,961 + +0.4 130,069 + +1.0 130,078 + +0.3 130,292 - GFF2338 0.33 -0.4 130,295 - GFF2338 0.33 -0.3 130,416 + GFF2338 0.47 +0.6 130,485 + GFF2338 0.55 +0.3 130,485 + GFF2338 0.55 +0.6 130,515 + GFF2338 0.58 +0.2 130,515 + GFF2338 0.58 -0.0 130,516 - GFF2338 0.59 -0.2 130,596 + GFF2338 0.68 +0.7 130,707 + GFF2338 0.80 -1.7 130,708 - GFF2338 0.80 -0.2 130,713 + GFF2338 0.81 +0.7 130,944 + GFF2339 0.18 +0.2 130,944 + GFF2339 0.18 -0.1 130,944 + GFF2339 0.18 +0.9 130,944 + GFF2339 0.18 +0.3 130,945 - GFF2339 0.18 +0.2 130,945 - GFF2339 0.18 -0.1 130,945 - GFF2339 0.18 -0.9 130,945 - GFF2339 0.18 +0.1 130,945 - GFF2339 0.18 -0.2 130,946 + GFF2339 0.18 +0.7 130,946 + GFF2339 0.18 -0.0
Or see this region's nucleotide sequence