Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2334

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
122,554	+		GFF2332	0.84	+0.5
122,661	-				+0.3
122,698	-				+0.3
122,699	+				-0.5
122,700	-				-0.2
122,703	+				-0.0
122,731	-				-0.3
122,743	+				-0.3
122,743	+				+0.2
122,793	+				-0.6
122,806	-				-0.2
122,816	+		GFF2333	0.11	-0.7
122,817	-		GFF2333	0.11	+0.6
122,836	-		GFF2333	0.14	-0.0
122,841	+		GFF2333	0.15	+0.8
122,842	-		GFF2333	0.15	+0.1
122,853	-		GFF2333	0.17	-0.1
122,903	+		GFF2333	0.24	+0.4
122,919	+		GFF2333	0.27	-0.7
122,973	-		GFF2333	0.35	+0.5
123,237	+		GFF2333	0.75	+0.7
123,237	+		GFF2333	0.75	-0.2
123,291	-		GFF2333	0.83	-0.9
123,404	+				+0.0
123,416	+				+0.1
123,534	+				+0.7
123,534	+				+0.5
123,534	+				-0.1
123,534	+				+0.3
123,561	+				-0.0
123,573	+				+0.4
123,574	-				-0.2
123,574	-				-0.6
123,652	-				+0.1
124,033	+		GFF2334	0.25	-0.5
124,224	+		GFF2334	0.32	+0.8
124,230	+		GFF2334	0.33	-0.3
124,231	-		GFF2334	0.33	+0.3
124,297	-		GFF2334	0.35	-1.1
124,329	+		GFF2334	0.37	-0.6
124,330	-		GFF2334	0.37	-0.4
124,330	-		GFF2334	0.37	-0.1
124,396	-		GFF2334	0.39	+0.4
124,471	-		GFF2334	0.42	+0.0
124,494	-		GFF2334	0.43	-0.4
124,573	+		GFF2334	0.47	-0.3
124,574	-		GFF2334	0.47	-0.9
124,677	+		GFF2334	0.51	+0.3
124,679	+		GFF2334	0.51	-0.8
124,679	+		GFF2334	0.51	+1.1
124,726	-		GFF2334	0.53	+0.2
124,866	-		GFF2334	0.58	-0.1
124,866	-		GFF2334	0.58	-0.6
124,925	+		GFF2334	0.61	+0.4
124,926	-		GFF2334	0.61	-0.2
124,926	-		GFF2334	0.61	-0.1
124,926	-		GFF2334	0.61	-0.2
124,952	-		GFF2334	0.62	-0.4
125,113	-		GFF2334	0.68	-0.9
125,160	-		GFF2334	0.70	-0.8
125,291	-		GFF2334	0.75	-0.3
125,315	-		GFF2334	0.76	-0.7
125,409	+		GFF2334	0.80	+0.8
125,429	-		GFF2334	0.81	-0.0
125,545	-		GFF2334	0.86	-0.1
125,832	+				+0.0
125,836	-				-1.1
125,848	+				+0.1
125,872	+				-0.1
125,873	-				+0.0
125,873	-				-0.5
125,895	+				-0.5
125,953	-				+0.2
126,287	+				+0.7
126,288	-				+0.2
126,340	+		GFF2335	0.11	-0.2
126,340	+		GFF2335	0.11	-1.9
126,341	-		GFF2335	0.11	-0.3
126,341	-		GFF2335	0.11	-1.0
126,447	+		GFF2335	0.21	+0.3
126,447	+		GFF2335	0.21	-0.4
126,457	-		GFF2335	0.21	-0.1
126,580	-		GFF2335	0.33	-0.1
126,657	-		GFF2335	0.40	-1.3
126,860	-		GFF2335	0.59	-0.4
126,862	-		GFF2335	0.59	+0.3
126,862	-		GFF2335	0.59	-0.0
126,863	+		GFF2335	0.59	+0.1
126,863	+		GFF2335	0.59	-0.2
126,864	-		GFF2335	0.59	+0.3