Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2282

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2280 and GFF2281 are separated by 150 nucleotidesGFF2281 and GFF2282 are separated by 147 nucleotidesGFF2282 and GFF2283 are separated by 184 nucleotides GFF2280 - Copper-sensing two-component system response regulator CpxR, at 68,670 to 69,368 GFF2280 GFF2281 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 69,519 to 70,019 GFF2281 GFF2282 - Cobalt-zinc-cadmium resistance protein, at 70,167 to 71,069 GFF2282 GFF2283 - 6-phosphofructokinase (EC 2.7.1.11), at 71,254 to 72,216 GFF2283 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3at 69.186 kb on - strand, within GFF2280at 69.373 kb on + strandat 69.395 kb on + strandat 69.414 kb on - strandat 69.426 kb on + strandat 69.427 kb on - strandat 69.437 kb on - strandat 69.593 kb on + strand, within GFF2281at 69.593 kb on + strand, within GFF2281at 69.635 kb on + strand, within GFF2281at 69.651 kb on - strand, within GFF2281at 69.651 kb on - strand, within GFF2281at 69.705 kb on - strand, within GFF2281at 69.705 kb on - strand, within GFF2281at 69.705 kb on - strand, within GFF2281at 69.705 kb on - strand, within GFF2281at 69.879 kb on + strand, within GFF2281at 70.115 kb on + strandat 70.115 kb on + strandat 70.137 kb on + strandat 70.137 kb on + strandat 70.138 kb on - strandat 70.166 kb on + strandat 70.263 kb on + strand, within GFF2282at 70.281 kb on - strand, within GFF2282at 70.428 kb on - strand, within GFF2282at 70.469 kb on + strand, within GFF2282at 70.551 kb on - strand, within GFF2282at 70.553 kb on + strand, within GFF2282at 70.554 kb on - strand, within GFF2282at 70.554 kb on - strand, within GFF2282at 70.582 kb on + strand, within GFF2282at 70.617 kb on - strand, within GFF2282at 70.740 kb on + strand, within GFF2282at 70.742 kb on + strand, within GFF2282at 70.751 kb on - strand, within GFF2282at 70.751 kb on - strand, within GFF2282at 70.762 kb on - strand, within GFF2282at 70.780 kb on + strand, within GFF2282at 71.009 kb on + strandat 71.009 kb on + strandat 71.010 kb on - strandat 71.068 kb on - strandat 71.164 kb on - strandat 71.166 kb on + strandat 71.166 kb on + strandat 71.166 kb on + strandat 71.166 kb on + strandat 71.166 kb on + strandat 71.167 kb on - strandat 71.167 kb on - strandat 71.172 kb on + strandat 71.377 kb on + strand, within GFF2283at 71.377 kb on + strand, within GFF2283at 71.400 kb on + strand, within GFF2283at 71.426 kb on + strand, within GFF2283at 71.426 kb on + strand, within GFF2283at 71.572 kb on + strand, within GFF2283at 71.572 kb on + strand, within GFF2283at 71.573 kb on - strand, within GFF2283at 71.574 kb on + strand, within GFF2283at 71.574 kb on + strand, within GFF2283at 71.575 kb on - strand, within GFF2283at 71.665 kb on - strand, within GFF2283at 71.743 kb on - strand, within GFF2283at 71.748 kb on + strand, within GFF2283at 71.820 kb on + strand, within GFF2283at 71.925 kb on + strand, within GFF2283at 71.925 kb on + strand, within GFF2283at 71.955 kb on + strand, within GFF2283at 72.032 kb on - strand, within GFF2283at 72.032 kb on - strand, within GFF2283

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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69,186 - GFF2280 0.74 -0.1
69,373 + -0.6
69,395 + -1.1
69,414 - -0.5
69,426 + -0.6
69,427 - +0.4
69,437 - +0.1
69,593 + GFF2281 0.15 +0.2
69,593 + GFF2281 0.15 +0.6
69,635 + GFF2281 0.23 -0.2
69,651 - GFF2281 0.26 -0.5
69,651 - GFF2281 0.26 +0.6
69,705 - GFF2281 0.37 -0.2
69,705 - GFF2281 0.37 +0.1
69,705 - GFF2281 0.37 -0.8
69,705 - GFF2281 0.37 +3.1
69,879 + GFF2281 0.72 +0.5
70,115 + -0.0
70,115 + +0.7
70,137 + +0.3
70,137 + -0.1
70,138 - +0.1
70,166 + -0.0
70,263 + GFF2282 0.11 +2.3
70,281 - GFF2282 0.13 +0.1
70,428 - GFF2282 0.29 +0.3
70,469 + GFF2282 0.33 +0.5
70,551 - GFF2282 0.43 +0.2
70,553 + GFF2282 0.43 +0.5
70,554 - GFF2282 0.43 +0.2
70,554 - GFF2282 0.43 +0.1
70,582 + GFF2282 0.46 +0.5
70,617 - GFF2282 0.50 +0.6
70,740 + GFF2282 0.63 -0.2
70,742 + GFF2282 0.64 +0.6
70,751 - GFF2282 0.65 +0.2
70,751 - GFF2282 0.65 +0.2
70,762 - GFF2282 0.66 -0.2
70,780 + GFF2282 0.68 +0.1
71,009 + +0.1
71,009 + +0.5
71,010 - +0.7
71,068 - +0.3
71,164 - -0.2
71,166 + +0.5
71,166 + +0.0
71,166 + -0.6
71,166 + +0.0
71,166 + +0.0
71,167 - -0.7
71,167 - -0.5
71,172 + -1.4
71,377 + GFF2283 0.13 -1.1
71,377 + GFF2283 0.13 -1.9
71,400 + GFF2283 0.15 +0.6
71,426 + GFF2283 0.18 -1.1
71,426 + GFF2283 0.18 -0.7
71,572 + GFF2283 0.33 -0.3
71,572 + GFF2283 0.33 -1.1
71,573 - GFF2283 0.33 -1.2
71,574 + GFF2283 0.33 -1.0
71,574 + GFF2283 0.33 -0.8
71,575 - GFF2283 0.33 -1.6
71,665 - GFF2283 0.43 -0.6
71,743 - GFF2283 0.51 -1.2
71,748 + GFF2283 0.51 -1.4
71,820 + GFF2283 0.59 -0.9
71,925 + GFF2283 0.70 -0.9
71,925 + GFF2283 0.70 -0.8
71,955 + GFF2283 0.73 +0.2
72,032 - GFF2283 0.81 -0.5
72,032 - GFF2283 0.81 -0.2

Or see this region's nucleotide sequence