Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2268

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2266 and GFF2267 are separated by 152 nucleotidesGFF2267 and GFF2268 overlap by 4 nucleotidesGFF2268 and GFF2269 are separated by 3 nucleotidesGFF2269 and GFF2270 are separated by 34 nucleotidesGFF2270 and GFF2271 are separated by 194 nucleotidesGFF2271 and GFF2272 are separated by 36 nucleotides GFF2266 - L-rhamnose operon regulatory protein RhaS, at 57,989 to 58,825 GFF2266 GFF2267 - L-rhamnose operon transcriptional activator RhaR, at 58,978 to 59,826 GFF2267 GFF2268 - L-rhamnose-proton symporter, at 59,823 to 60,857 GFF2268 GFF2269 - hypothetical protein, at 60,861 to 60,992 GFF2269 GFF2270 - hypothetical protein, at 61,027 to 61,140 GFF2270 GFF2271 - hypothetical protein, at 61,335 to 61,451 GFF2271 GFF2272 - Oligogalacturonide-Rhamnogalacturonide-specific porin, at 61,488 to 62,159 GFF2272 Position (kb) 59 60 61Strain fitness (log2 ratio) -1 0 1 2 3at 58.857 kb on - strandat 58.865 kb on - strandat 58.868 kb on + strandat 58.868 kb on + strandat 58.901 kb on + strandat 58.902 kb on - strandat 58.935 kb on - strandat 58.935 kb on - strandat 58.940 kb on + strandat 59.079 kb on + strand, within GFF2267at 59.080 kb on - strand, within GFF2267at 59.080 kb on - strand, within GFF2267at 59.126 kb on + strand, within GFF2267at 59.137 kb on - strand, within GFF2267at 59.203 kb on + strand, within GFF2267at 59.204 kb on - strand, within GFF2267at 59.204 kb on - strand, within GFF2267at 59.206 kb on - strand, within GFF2267at 59.206 kb on - strand, within GFF2267at 59.523 kb on + strand, within GFF2267at 59.523 kb on + strand, within GFF2267at 59.665 kb on - strand, within GFF2267at 59.868 kb on + strandat 59.886 kb on + strandat 59.889 kb on + strandat 59.890 kb on - strandat 59.890 kb on - strandat 59.929 kb on - strand, within GFF2268at 59.962 kb on + strand, within GFF2268at 59.962 kb on + strand, within GFF2268at 59.963 kb on - strand, within GFF2268at 59.963 kb on - strand, within GFF2268at 59.993 kb on - strand, within GFF2268at 59.993 kb on - strand, within GFF2268at 59.998 kb on + strand, within GFF2268at 59.998 kb on + strand, within GFF2268at 60.031 kb on + strand, within GFF2268at 60.226 kb on + strand, within GFF2268at 60.227 kb on - strand, within GFF2268at 60.227 kb on - strand, within GFF2268at 60.475 kb on - strand, within GFF2268at 60.475 kb on - strand, within GFF2268at 60.488 kb on + strand, within GFF2268at 60.501 kb on - strand, within GFF2268at 60.501 kb on - strand, within GFF2268at 60.531 kb on - strand, within GFF2268at 60.589 kb on + strand, within GFF2268at 60.594 kb on - strand, within GFF2268at 60.594 kb on - strand, within GFF2268at 60.594 kb on - strand, within GFF2268at 60.667 kb on + strand, within GFF2268at 60.790 kb on + strandat 60.938 kb on + strand, within GFF2269at 61.078 kb on + strand, within GFF2270at 61.602 kb on + strand, within GFF2272at 61.719 kb on - strand, within GFF2272at 61.736 kb on + strand, within GFF2272at 61.801 kb on - strand, within GFF2272at 61.801 kb on - strand, within GFF2272

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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58,857 - +0.0
58,865 - +0.2
58,868 + +1.5
58,868 + +0.1
58,901 + -0.9
58,902 - +0.1
58,935 - -0.5
58,935 - +0.3
58,940 + +0.6
59,079 + GFF2267 0.12 +1.7
59,080 - GFF2267 0.12 +0.3
59,080 - GFF2267 0.12 -0.0
59,126 + GFF2267 0.17 -0.5
59,137 - GFF2267 0.19 +0.6
59,203 + GFF2267 0.27 -0.2
59,204 - GFF2267 0.27 +0.3
59,204 - GFF2267 0.27 +0.9
59,206 - GFF2267 0.27 -0.3
59,206 - GFF2267 0.27 -0.1
59,523 + GFF2267 0.64 +0.3
59,523 + GFF2267 0.64 +0.1
59,665 - GFF2267 0.81 -0.3
59,868 + +0.2
59,886 + -1.1
59,889 + +0.2
59,890 - -0.3
59,890 - +0.2
59,929 - GFF2268 0.10 +0.1
59,962 + GFF2268 0.13 +0.0
59,962 + GFF2268 0.13 +2.8
59,963 - GFF2268 0.14 -0.3
59,963 - GFF2268 0.14 +0.4
59,993 - GFF2268 0.16 +0.3
59,993 - GFF2268 0.16 +0.5
59,998 + GFF2268 0.17 +0.4
59,998 + GFF2268 0.17 +0.2
60,031 + GFF2268 0.20 +0.4
60,226 + GFF2268 0.39 +0.2
60,227 - GFF2268 0.39 +0.6
60,227 - GFF2268 0.39 -0.3
60,475 - GFF2268 0.63 +0.2
60,475 - GFF2268 0.63 +0.3
60,488 + GFF2268 0.64 +0.4
60,501 - GFF2268 0.66 -0.9
60,501 - GFF2268 0.66 -0.0
60,531 - GFF2268 0.68 -0.9
60,589 + GFF2268 0.74 -0.1
60,594 - GFF2268 0.74 -0.3
60,594 - GFF2268 0.74 +0.3
60,594 - GFF2268 0.74 +1.3
60,667 + GFF2268 0.82 +0.7
60,790 + +0.3
60,938 + GFF2269 0.58 +0.1
61,078 + GFF2270 0.45 +0.6
61,602 + GFF2272 0.17 -0.1
61,719 - GFF2272 0.34 +0.0
61,736 + GFF2272 0.37 +0.3
61,801 - GFF2272 0.47 +0.8
61,801 - GFF2272 0.47 +0.4

Or see this region's nucleotide sequence