Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2235

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2233 and GFF2234 are separated by 43 nucleotidesGFF2234 and GFF2235 are separated by 18 nucleotidesGFF2235 and GFF2236 are separated by 15 nucleotidesGFF2236 and GFF2237 are separated by 22 nucleotides GFF2233 - Alpha-glucosyltransferase YihQ, at 27,589 to 29,625 GFF2233 GFF2234 - Sugar-1-epimerase YihR, at 29,669 to 30,511 GFF2234 GFF2235 - Aldose-ketose isomerase YihS, at 30,530 to 31,771 GFF2235 GFF2236 - Aldolase YihT, at 31,787 to 32,665 GFF2236 GFF2237 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 32,688 to 33,584 GFF2237 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 29.743 kb on + strandat 29.812 kb on - strand, within GFF2234at 29.819 kb on + strand, within GFF2234at 29.872 kb on + strand, within GFF2234at 29.900 kb on - strand, within GFF2234at 29.911 kb on + strand, within GFF2234at 30.002 kb on + strand, within GFF2234at 30.010 kb on + strand, within GFF2234at 30.169 kb on - strand, within GFF2234at 30.216 kb on + strand, within GFF2234at 30.221 kb on - strand, within GFF2234at 30.309 kb on + strand, within GFF2234at 30.310 kb on - strand, within GFF2234at 30.315 kb on + strand, within GFF2234at 30.315 kb on + strand, within GFF2234at 30.531 kb on + strandat 30.531 kb on + strandat 30.627 kb on + strandat 30.627 kb on + strandat 30.632 kb on - strandat 30.632 kb on - strandat 30.708 kb on + strand, within GFF2235at 30.724 kb on + strand, within GFF2235at 30.724 kb on + strand, within GFF2235at 30.725 kb on - strand, within GFF2235at 30.725 kb on - strand, within GFF2235at 30.843 kb on - strand, within GFF2235at 30.848 kb on - strand, within GFF2235at 30.853 kb on + strand, within GFF2235at 31.072 kb on + strand, within GFF2235at 31.073 kb on - strand, within GFF2235at 31.081 kb on + strand, within GFF2235at 31.082 kb on - strand, within GFF2235at 31.218 kb on + strand, within GFF2235at 31.249 kb on + strand, within GFF2235at 31.338 kb on + strand, within GFF2235at 31.356 kb on - strand, within GFF2235at 31.460 kb on + strand, within GFF2235at 31.557 kb on + strand, within GFF2235at 31.558 kb on - strand, within GFF2235at 31.859 kb on + strandat 31.859 kb on + strandat 32.015 kb on - strand, within GFF2236at 32.092 kb on - strand, within GFF2236at 32.180 kb on + strand, within GFF2236at 32.181 kb on - strand, within GFF2236at 32.222 kb on + strand, within GFF2236at 32.336 kb on - strand, within GFF2236at 32.455 kb on - strand, within GFF2236at 32.491 kb on - strand, within GFF2236at 32.655 kb on + strandat 32.656 kb on - strandat 32.680 kb on + strandat 32.680 kb on + strandat 32.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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29,743 + +0.0
29,812 - GFF2234 0.17 +0.1
29,819 + GFF2234 0.18 +0.1
29,872 + GFF2234 0.24 -0.2
29,900 - GFF2234 0.27 +0.4
29,911 + GFF2234 0.29 +0.0
30,002 + GFF2234 0.40 +0.6
30,010 + GFF2234 0.40 -0.1
30,169 - GFF2234 0.59 +0.2
30,216 + GFF2234 0.65 +0.3
30,221 - GFF2234 0.65 +0.2
30,309 + GFF2234 0.76 +0.1
30,310 - GFF2234 0.76 +0.0
30,315 + GFF2234 0.77 +0.4
30,315 + GFF2234 0.77 -0.2
30,531 + -0.3
30,531 + -0.6
30,627 + +0.1
30,627 + +0.3
30,632 - +1.7
30,632 - +0.6
30,708 + GFF2235 0.14 -0.5
30,724 + GFF2235 0.16 +0.4
30,724 + GFF2235 0.16 -0.1
30,725 - GFF2235 0.16 -0.2
30,725 - GFF2235 0.16 -0.2
30,843 - GFF2235 0.25 -0.2
30,848 - GFF2235 0.26 -0.3
30,853 + GFF2235 0.26 -0.1
31,072 + GFF2235 0.44 +0.1
31,073 - GFF2235 0.44 +0.1
31,081 + GFF2235 0.44 -1.6
31,082 - GFF2235 0.44 -0.1
31,218 + GFF2235 0.55 +0.1
31,249 + GFF2235 0.58 -0.1
31,338 + GFF2235 0.65 +0.1
31,356 - GFF2235 0.67 -0.1
31,460 + GFF2235 0.75 +0.6
31,557 + GFF2235 0.83 -0.6
31,558 - GFF2235 0.83 +0.2
31,859 + -0.3
31,859 + +0.2
32,015 - GFF2236 0.26 +0.5
32,092 - GFF2236 0.35 +0.4
32,180 + GFF2236 0.45 -0.5
32,181 - GFF2236 0.45 -0.1
32,222 + GFF2236 0.49 -0.4
32,336 - GFF2236 0.62 -0.1
32,455 - GFF2236 0.76 -0.1
32,491 - GFF2236 0.80 +0.5
32,655 + +0.1
32,656 - -0.2
32,680 + -0.7
32,680 + -0.2
32,681 - -0.3

Or see this region's nucleotide sequence