Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF219 and GFF220 are separated by 10 nucleotides GFF220 and GFF221 overlap by 4 nucleotides GFF221 and GFF222 are separated by 29 nucleotides
GFF219 - Citrate lyase alpha chain (EC 4.1.3.6), at 216,690 to 218,210
GFF219
GFF220 - Citrate lyase beta chain (EC 4.1.3.6), at 218,221 to 219,090
GFF220
GFF221 - Citrate lyase beta chain (EC 4.1.3.6), at 219,087 to 219,380
GFF221
GFF222 - [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22), at 219,410 to 220,441
GFF222
Position (kb) 218
219
220 Strain fitness (log2 ratio) -1
0
1 at 217.528 kb on - strand, within GFF219 at 217.528 kb on - strand, within GFF219 at 217.633 kb on + strand, within GFF219 at 217.890 kb on - strand, within GFF219 at 217.923 kb on + strand, within GFF219 at 218.158 kb on - strand at 218.196 kb on + strand at 218.227 kb on + strand at 218.360 kb on + strand, within GFF220 at 218.360 kb on + strand, within GFF220 at 218.404 kb on + strand, within GFF220 at 218.405 kb on - strand, within GFF220 at 218.432 kb on - strand, within GFF220 at 218.439 kb on + strand, within GFF220 at 218.446 kb on - strand, within GFF220 at 218.497 kb on - strand, within GFF220 at 218.889 kb on + strand, within GFF220 at 218.918 kb on + strand, within GFF220 at 218.919 kb on - strand, within GFF220 at 218.948 kb on - strand, within GFF220 at 218.974 kb on + strand, within GFF220 at 218.975 kb on - strand, within GFF220 at 219.072 kb on + strand at 219.073 kb on - strand at 219.073 kb on - strand at 219.385 kb on + strand at 219.386 kb on - strand at 219.482 kb on + strand at 219.497 kb on - strand at 219.497 kb on - strand at 219.508 kb on - strand at 219.634 kb on - strand, within GFF222 at 219.683 kb on - strand, within GFF222 at 219.802 kb on + strand, within GFF222 at 219.804 kb on + strand, within GFF222 at 219.805 kb on - strand, within GFF222 at 219.805 kb on - strand, within GFF222
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 217,528 - GFF219 0.55 -0.4 217,528 - GFF219 0.55 +0.7 217,633 + GFF219 0.62 -0.0 217,890 - GFF219 0.79 +0.1 217,923 + GFF219 0.81 +0.3 218,158 - +0.8 218,196 + -0.2 218,227 + +1.0 218,360 + GFF220 0.16 +0.3 218,360 + GFF220 0.16 -0.3 218,404 + GFF220 0.21 +0.4 218,405 - GFF220 0.21 +0.2 218,432 - GFF220 0.24 +0.8 218,439 + GFF220 0.25 -0.5 218,446 - GFF220 0.26 +0.1 218,497 - GFF220 0.32 -0.2 218,889 + GFF220 0.77 +0.9 218,918 + GFF220 0.80 -0.3 218,919 - GFF220 0.80 +0.3 218,948 - GFF220 0.84 +1.2 218,974 + GFF220 0.87 -0.0 218,975 - GFF220 0.87 +0.2 219,072 + -0.6 219,073 - +0.1 219,073 - -0.2 219,385 + -0.0 219,386 - +0.2 219,482 + -1.3 219,497 - -0.1 219,497 - -0.1 219,508 - -0.5 219,634 - GFF222 0.22 -0.6 219,683 - GFF222 0.26 +0.3 219,802 + GFF222 0.38 -0.1 219,804 + GFF222 0.38 +0.2 219,805 - GFF222 0.38 -0.2 219,805 - GFF222 0.38 -0.5
Or see this region's nucleotide sequence