Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2152 and GFF2153 are separated by 32 nucleotides GFF2153 and GFF2154 overlap by 1 nucleotides GFF2154 and GFF2155 are separated by 155 nucleotides
GFF2152 - Putative membrane protein, at 41,855 to 43,123
GFF2152
GFF2153 - L(+)-tartrate dehydratase alpha subunit (EC 4.2.1.32), at 43,156 to 44,055
GFF2153
GFF2154 - L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32), at 44,055 to 44,672
GFF2154
GFF2155 - Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3), at 44,828 to 45,082
GFF2155
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1 at 42.419 kb on + strand, within GFF2152 at 42.430 kb on + strand, within GFF2152 at 42.500 kb on + strand, within GFF2152 at 42.500 kb on + strand, within GFF2152 at 42.500 kb on + strand, within GFF2152 at 42.501 kb on - strand, within GFF2152 at 42.613 kb on + strand, within GFF2152 at 42.637 kb on - strand, within GFF2152 at 42.768 kb on + strand, within GFF2152 at 42.968 kb on + strand, within GFF2152 at 42.986 kb on - strand, within GFF2152 at 43.037 kb on + strand at 43.302 kb on + strand, within GFF2153 at 43.306 kb on - strand, within GFF2153 at 43.460 kb on + strand, within GFF2153 at 43.460 kb on + strand, within GFF2153 at 43.487 kb on + strand, within GFF2153 at 43.488 kb on - strand, within GFF2153 at 43.585 kb on + strand, within GFF2153 at 43.585 kb on + strand, within GFF2153 at 43.587 kb on + strand, within GFF2153 at 43.591 kb on + strand, within GFF2153 at 43.592 kb on - strand, within GFF2153 at 43.592 kb on - strand, within GFF2153 at 43.594 kb on - strand, within GFF2153 at 43.594 kb on - strand, within GFF2153 at 43.696 kb on + strand, within GFF2153 at 43.697 kb on - strand, within GFF2153 at 43.987 kb on - strand at 43.996 kb on - strand at 44.028 kb on + strand at 44.141 kb on + strand, within GFF2154 at 44.161 kb on + strand, within GFF2154 at 44.565 kb on - strand, within GFF2154 at 44.656 kb on + strand at 44.705 kb on + strand at 44.724 kb on + strand at 44.770 kb on + strand at 44.786 kb on + strand at 44.786 kb on + strand at 44.786 kb on + strand at 44.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 42,419 + GFF2152 0.44 +1.1 42,430 + GFF2152 0.45 +0.4 42,500 + GFF2152 0.51 -0.1 42,500 + GFF2152 0.51 +0.3 42,500 + GFF2152 0.51 +0.5 42,501 - GFF2152 0.51 -0.3 42,613 + GFF2152 0.60 -0.3 42,637 - GFF2152 0.62 +0.8 42,768 + GFF2152 0.72 +1.1 42,968 + GFF2152 0.88 +0.1 42,986 - GFF2152 0.89 +1.2 43,037 + -0.2 43,302 + GFF2153 0.16 -0.1 43,306 - GFF2153 0.17 -0.1 43,460 + GFF2153 0.34 +0.9 43,460 + GFF2153 0.34 +0.4 43,487 + GFF2153 0.37 +0.1 43,488 - GFF2153 0.37 +0.2 43,585 + GFF2153 0.48 +0.1 43,585 + GFF2153 0.48 +0.3 43,587 + GFF2153 0.48 -0.3 43,591 + GFF2153 0.48 +0.2 43,592 - GFF2153 0.48 +0.5 43,592 - GFF2153 0.48 +1.1 43,594 - GFF2153 0.49 +0.4 43,594 - GFF2153 0.49 +0.3 43,696 + GFF2153 0.60 -0.3 43,697 - GFF2153 0.60 +0.7 43,987 - -1.1 43,996 - +1.0 44,028 + -0.4 44,141 + GFF2154 0.14 -0.4 44,161 + GFF2154 0.17 +0.6 44,565 - GFF2154 0.83 -0.3 44,656 + -0.1 44,705 + +0.0 44,724 + -0.1 44,770 + +1.7 44,786 + -0.2 44,786 + -2.3 44,786 + +0.2 44,823 - -1.0
Or see this region's nucleotide sequence