Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF209

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF208 and GFF209 are separated by 62 nucleotidesGFF209 and GFF210 are separated by 53 nucleotidesGFF210 and GFF211 are separated by 108 nucleotides GFF208 - Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-), at 203,639 to 204,910 GFF208 GFF209 - Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-), at 204,973 to 206,526 GFF209 GFF210 - Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-), at 206,580 to 207,365 GFF210 GFF211 - Carnitine operon protein CaiE, at 207,474 to 208,070 GFF211 Position (kb) 204 205 206 207Strain fitness (log2 ratio) -1 0 1at 204.077 kb on + strand, within GFF208at 204.110 kb on + strand, within GFF208at 204.110 kb on + strand, within GFF208at 204.111 kb on - strand, within GFF208at 204.188 kb on + strand, within GFF208at 204.200 kb on + strand, within GFF208at 204.293 kb on + strand, within GFF208at 204.321 kb on - strand, within GFF208at 204.365 kb on - strand, within GFF208at 204.390 kb on - strand, within GFF208at 204.408 kb on - strand, within GFF208at 204.425 kb on + strand, within GFF208at 204.641 kb on - strand, within GFF208at 204.683 kb on - strand, within GFF208at 204.692 kb on + strand, within GFF208at 204.692 kb on + strand, within GFF208at 204.745 kb on + strand, within GFF208at 204.865 kb on + strandat 204.868 kb on + strandat 204.869 kb on - strandat 205.086 kb on + strandat 205.086 kb on + strandat 205.086 kb on + strandat 205.091 kb on - strandat 205.249 kb on - strand, within GFF209at 205.330 kb on + strand, within GFF209at 205.340 kb on - strand, within GFF209at 205.349 kb on + strand, within GFF209at 205.380 kb on + strand, within GFF209at 205.380 kb on + strand, within GFF209at 205.381 kb on - strand, within GFF209at 205.439 kb on + strand, within GFF209at 205.440 kb on - strand, within GFF209at 205.470 kb on + strand, within GFF209at 205.547 kb on + strand, within GFF209at 205.547 kb on + strand, within GFF209at 205.558 kb on + strand, within GFF209at 205.559 kb on - strand, within GFF209at 205.583 kb on - strand, within GFF209at 205.709 kb on + strand, within GFF209at 205.750 kb on - strand, within GFF209at 206.013 kb on + strand, within GFF209at 206.014 kb on - strand, within GFF209at 206.017 kb on + strand, within GFF209at 206.018 kb on - strand, within GFF209at 206.018 kb on - strand, within GFF209at 206.086 kb on - strand, within GFF209at 206.106 kb on + strand, within GFF209at 206.107 kb on - strand, within GFF209at 206.122 kb on + strand, within GFF209at 206.122 kb on + strand, within GFF209at 206.122 kb on + strand, within GFF209at 206.123 kb on - strand, within GFF209at 206.171 kb on + strand, within GFF209at 206.332 kb on - strand, within GFF209at 206.379 kb on + strandat 206.380 kb on - strandat 206.560 kb on + strandat 206.627 kb on + strandat 206.776 kb on + strand, within GFF210at 207.211 kb on - strand, within GFF210at 207.402 kb on + strandat 207.467 kb on + strandat 207.468 kb on - strandat 207.473 kb on + strandat 207.473 kb on + strandat 207.473 kb on + strandat 207.474 kb on - strandat 207.474 kb on - strandat 207.474 kb on - strandat 207.481 kb on - strandat 207.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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204,077 + GFF208 0.34 -0.1
204,110 + GFF208 0.37 -0.9
204,110 + GFF208 0.37 +1.1
204,111 - GFF208 0.37 +0.1
204,188 + GFF208 0.43 -0.9
204,200 + GFF208 0.44 +0.1
204,293 + GFF208 0.51 -0.2
204,321 - GFF208 0.54 -0.1
204,365 - GFF208 0.57 +0.2
204,390 - GFF208 0.59 +0.8
204,408 - GFF208 0.60 +0.1
204,425 + GFF208 0.62 +0.9
204,641 - GFF208 0.79 -0.5
204,683 - GFF208 0.82 -0.0
204,692 + GFF208 0.83 -0.4
204,692 + GFF208 0.83 +0.2
204,745 + GFF208 0.87 +0.4
204,865 + +1.1
204,868 + -0.1
204,869 - +0.2
205,086 + -1.1
205,086 + +0.1
205,086 + +0.4
205,091 - +0.2
205,249 - GFF209 0.18 -0.3
205,330 + GFF209 0.23 +0.2
205,340 - GFF209 0.24 +0.0
205,349 + GFF209 0.24 +0.2
205,380 + GFF209 0.26 -0.2
205,380 + GFF209 0.26 +0.8
205,381 - GFF209 0.26 +0.2
205,439 + GFF209 0.30 +0.0
205,440 - GFF209 0.30 -0.3
205,470 + GFF209 0.32 -0.1
205,547 + GFF209 0.37 +0.3
205,547 + GFF209 0.37 +0.2
205,558 + GFF209 0.38 +1.0
205,559 - GFF209 0.38 -0.3
205,583 - GFF209 0.39 +0.3
205,709 + GFF209 0.47 +0.7
205,750 - GFF209 0.50 +0.5
206,013 + GFF209 0.67 -0.5
206,014 - GFF209 0.67 +0.2
206,017 + GFF209 0.67 +0.3
206,018 - GFF209 0.67 -0.1
206,018 - GFF209 0.67 +0.1
206,086 - GFF209 0.72 +0.1
206,106 + GFF209 0.73 -0.1
206,107 - GFF209 0.73 +0.2
206,122 + GFF209 0.74 +0.3
206,122 + GFF209 0.74 +0.4
206,122 + GFF209 0.74 +0.3
206,123 - GFF209 0.74 +0.7
206,171 + GFF209 0.77 +1.1
206,332 - GFF209 0.87 +1.5
206,379 + -0.1
206,380 - -1.0
206,560 + -0.1
206,627 + -0.3
206,776 + GFF210 0.25 +0.7
207,211 - GFF210 0.80 -0.7
207,402 + +0.7
207,467 + +0.1
207,468 - -0.3
207,473 + +0.5
207,473 + -0.0
207,473 + -0.4
207,474 - -0.0
207,474 - -0.0
207,474 - +0.1
207,481 - +0.1
207,481 - +0.1

Or see this region's nucleotide sequence