Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2075 and GFF2076 are separated by 119 nucleotides GFF2076 and GFF2077 overlap by 11 nucleotides GFF2077 and GFF2078 are separated by 10 nucleotides
GFF2075 - Ethanolamine permease, at 38,043 to 39,269
GFF2075
GFF2076 - Ethanolamine utilization protein EutG, at 39,389 to 40,576
GFF2076
GFF2077 - Ethanolamine utilization protein EutJ, at 40,566 to 41,405
GFF2077
GFF2078 - Acetaldehyde dehydrogenase, ethanolamine utilization cluster (EC 1.2.1.10), at 41,416 to 42,819
GFF2078
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1 at 38.391 kb on + strand, within GFF2075 at 38.490 kb on - strand, within GFF2075 at 38.893 kb on - strand, within GFF2075 at 38.905 kb on + strand, within GFF2075 at 38.905 kb on + strand, within GFF2075 at 39.022 kb on - strand, within GFF2075 at 39.244 kb on + strand at 39.245 kb on - strand at 39.317 kb on + strand at 39.461 kb on - strand at 39.797 kb on - strand, within GFF2076 at 40.076 kb on + strand, within GFF2076 at 40.143 kb on - strand, within GFF2076 at 40.148 kb on - strand, within GFF2076 at 40.148 kb on - strand, within GFF2076 at 40.431 kb on - strand, within GFF2076 at 40.562 kb on + strand at 40.562 kb on + strand at 40.563 kb on - strand at 40.628 kb on + strand at 40.889 kb on + strand, within GFF2077 at 40.890 kb on - strand, within GFF2077 at 40.921 kb on + strand, within GFF2077 at 40.922 kb on - strand, within GFF2077 at 40.922 kb on - strand, within GFF2077 at 40.922 kb on - strand, within GFF2077 at 40.922 kb on - strand, within GFF2077 at 41.034 kb on + strand, within GFF2077 at 41.508 kb on + strand at 41.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 38,391 + GFF2075 0.28 -1.2 38,490 - GFF2075 0.36 +0.2 38,893 - GFF2075 0.69 +0.1 38,905 + GFF2075 0.70 +0.2 38,905 + GFF2075 0.70 -1.7 39,022 - GFF2075 0.80 -0.1 39,244 + -0.0 39,245 - -1.4 39,317 + +0.6 39,461 - +0.5 39,797 - GFF2076 0.34 -0.3 40,076 + GFF2076 0.58 +0.3 40,143 - GFF2076 0.63 -0.6 40,148 - GFF2076 0.64 +0.1 40,148 - GFF2076 0.64 -0.7 40,431 - GFF2076 0.88 -0.1 40,562 + +0.2 40,562 + +1.1 40,563 - -0.2 40,628 + -0.2 40,889 + GFF2077 0.38 -1.4 40,890 - GFF2077 0.39 +0.5 40,921 + GFF2077 0.42 -0.3 40,922 - GFF2077 0.42 -0.4 40,922 - GFF2077 0.42 -0.4 40,922 - GFF2077 0.42 -1.1 40,922 - GFF2077 0.42 -0.7 41,034 + GFF2077 0.56 +1.1 41,508 + -0.2 41,508 + -0.0
Or see this region's nucleotide sequence