Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2072

Experiment: C.elegans, mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2070 and GFF2071 are separated by 12 nucleotidesGFF2071 and GFF2072 are separated by 9 nucleotidesGFF2072 and GFF2073 are separated by 18 nucleotides GFF2070 - Ethanolamine utilization polyhedral-body-like protein EutK, at 33,179 to 33,673 GFF2070 GFF2071 - Ethanolamine utilization polyhedral-body-like protein EutL, at 33,686 to 34,345 GFF2071 GFF2072 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 34,355 to 35,251 GFF2072 GFF2073 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 35,270 to 36,631 GFF2073 Position (kb) 34 35 36Strain fitness (log2 ratio) -1 0 1at 33.607 kb on + strand, within GFF2070at 33.707 kb on - strandat 33.733 kb on + strandat 33.819 kb on + strand, within GFF2071at 33.942 kb on + strand, within GFF2071at 33.943 kb on - strand, within GFF2071at 34.153 kb on - strand, within GFF2071at 34.199 kb on - strand, within GFF2071at 34.200 kb on + strand, within GFF2071at 34.241 kb on - strand, within GFF2071at 34.241 kb on - strand, within GFF2071at 34.245 kb on - strand, within GFF2071at 34.245 kb on - strand, within GFF2071at 34.245 kb on - strand, within GFF2071at 34.246 kb on + strand, within GFF2071at 34.246 kb on + strand, within GFF2071at 34.247 kb on - strand, within GFF2071at 34.247 kb on - strand, within GFF2071at 34.247 kb on - strand, within GFF2071at 34.262 kb on - strand, within GFF2071at 34.710 kb on + strand, within GFF2072at 34.710 kb on + strand, within GFF2072at 34.711 kb on - strand, within GFF2072at 34.754 kb on + strand, within GFF2072at 34.754 kb on + strand, within GFF2072at 34.846 kb on - strand, within GFF2072at 35.222 kb on + strandat 35.421 kb on + strand, within GFF2073at 35.422 kb on - strand, within GFF2073at 35.464 kb on - strand, within GFF2073at 35.464 kb on - strand, within GFF2073at 35.581 kb on + strand, within GFF2073at 35.626 kb on - strand, within GFF2073at 35.626 kb on - strand, within GFF2073at 35.701 kb on + strand, within GFF2073at 35.701 kb on + strand, within GFF2073at 35.702 kb on - strand, within GFF2073at 35.778 kb on + strand, within GFF2073at 35.779 kb on - strand, within GFF2073at 36.115 kb on + strand, within GFF2073at 36.122 kb on + strand, within GFF2073

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1
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33,607 + GFF2070 0.86 +0.8
33,707 - -0.9
33,733 + +0.2
33,819 + GFF2071 0.20 -0.8
33,942 + GFF2071 0.39 -0.2
33,943 - GFF2071 0.39 +0.2
34,153 - GFF2071 0.71 +0.4
34,199 - GFF2071 0.78 +0.4
34,200 + GFF2071 0.78 +0.8
34,241 - GFF2071 0.84 +0.2
34,241 - GFF2071 0.84 +0.1
34,245 - GFF2071 0.85 +0.5
34,245 - GFF2071 0.85 -0.1
34,245 - GFF2071 0.85 +0.1
34,246 + GFF2071 0.85 +0.2
34,246 + GFF2071 0.85 +0.2
34,247 - GFF2071 0.85 +0.0
34,247 - GFF2071 0.85 +0.0
34,247 - GFF2071 0.85 +0.7
34,262 - GFF2071 0.87 +0.3
34,710 + GFF2072 0.40 +0.6
34,710 + GFF2072 0.40 +0.8
34,711 - GFF2072 0.40 +1.4
34,754 + GFF2072 0.44 +0.8
34,754 + GFF2072 0.44 -0.2
34,846 - GFF2072 0.55 +0.5
35,222 + -0.1
35,421 + GFF2073 0.11 -0.3
35,422 - GFF2073 0.11 -0.0
35,464 - GFF2073 0.14 -0.4
35,464 - GFF2073 0.14 -0.0
35,581 + GFF2073 0.23 +0.3
35,626 - GFF2073 0.26 +0.1
35,626 - GFF2073 0.26 +0.0
35,701 + GFF2073 0.32 +0.7
35,701 + GFF2073 0.32 -0.6
35,702 - GFF2073 0.32 +0.2
35,778 + GFF2073 0.37 +0.1
35,779 - GFF2073 0.37 +0.4
36,115 + GFF2073 0.62 -0.3
36,122 + GFF2073 0.63 +0.1

Or see this region's nucleotide sequence