Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF202 and GFF203 are separated by 49 nucleotides GFF203 and GFF204 are separated by 15 nucleotides GFF204 and GFF205 are separated by 67 nucleotides
GFF202 - Probable electron transfer flavoprotein-quinone oxidoreductase FixC (EC 1.5.5.-), at 197,343 to 198,629
GFF202
GFF203 - Electron transfer flavoprotein, alpha subunit FixB, at 198,679 to 199,620
GFF203
GFF204 - Electron transfer flavoprotein, beta subunit FixA, at 199,636 to 200,406
GFF204
GFF205 - FIG01045916: hypothetical protein, at 200,474 to 200,659
GFF205
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 197.708 kb on + strand, within GFF202 at 197.740 kb on - strand, within GFF202 at 197.769 kb on - strand, within GFF202 at 197.769 kb on - strand, within GFF202 at 197.769 kb on - strand, within GFF202 at 197.804 kb on - strand, within GFF202 at 198.024 kb on + strand, within GFF202 at 198.312 kb on + strand, within GFF202 at 198.313 kb on - strand, within GFF202 at 198.470 kb on + strand, within GFF202 at 198.471 kb on - strand, within GFF202 at 198.478 kb on + strand, within GFF202 at 198.617 kb on + strand at 198.629 kb on + strand at 198.629 kb on + strand at 198.629 kb on + strand at 198.629 kb on + strand at 198.630 kb on - strand at 198.630 kb on - strand at 198.630 kb on - strand at 198.630 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.653 kb on + strand at 198.654 kb on - strand at 198.854 kb on + strand, within GFF203 at 198.855 kb on - strand, within GFF203 at 199.245 kb on + strand, within GFF203 at 199.421 kb on + strand, within GFF203 at 199.540 kb on + strand at 199.541 kb on - strand at 199.638 kb on - strand at 199.760 kb on - strand, within GFF204 at 199.855 kb on - strand, within GFF204 at 199.931 kb on - strand, within GFF204 at 200.058 kb on + strand, within GFF204 at 200.059 kb on - strand, within GFF204 at 200.063 kb on - strand, within GFF204
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 197,708 + GFF202 0.28 +0.6 197,740 - GFF202 0.31 +0.2 197,769 - GFF202 0.33 -0.1 197,769 - GFF202 0.33 +0.0 197,769 - GFF202 0.33 -0.0 197,804 - GFF202 0.36 +0.3 198,024 + GFF202 0.53 -1.1 198,312 + GFF202 0.75 -0.3 198,313 - GFF202 0.75 +0.1 198,470 + GFF202 0.88 +1.2 198,471 - GFF202 0.88 -0.4 198,478 + GFF202 0.88 +2.0 198,617 + -0.4 198,629 + -0.2 198,629 + -0.7 198,629 + -0.8 198,629 + +0.5 198,630 - +0.2 198,630 - -0.3 198,630 - -0.2 198,630 - +0.2 198,634 - +0.4 198,634 - +1.3 198,634 - +0.0 198,634 - +0.3 198,653 + +0.1 198,654 - -0.8 198,854 + GFF203 0.19 +0.1 198,855 - GFF203 0.19 +0.3 199,245 + GFF203 0.60 +0.9 199,421 + GFF203 0.79 +0.5 199,540 + -2.0 199,541 - +0.9 199,638 - -0.0 199,760 - GFF204 0.16 +0.1 199,855 - GFF204 0.28 -0.1 199,931 - GFF204 0.38 +0.2 200,058 + GFF204 0.55 -0.2 200,059 - GFF204 0.55 -0.2 200,063 - GFF204 0.55 +0.3
Or see this region's nucleotide sequence