Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2007 and GFF2008 are separated by 47 nucleotides GFF2008 and GFF2009 are separated by 243 nucleotides GFF2009 and GFF2010 are separated by 43 nucleotides GFF2010 and GFF2011 are separated by 254 nucleotides
GFF2007 - FIG00733146: hypothetical protein, at 18,215 to 19,072
GFF2007
GFF2008 - probable membrane protein yjeI, at 19,120 to 19,473
GFF2008
GFF2009 - Heat shock protein 60 family chaperone GroEL, at 19,717 to 21,363
GFF2009
GFF2010 - Heat shock protein 60 family co-chaperone GroES, at 21,407 to 21,700
GFF2010
GFF2011 - Putative permease, at 21,955 to 23,217
GFF2011
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -1
0
1 at 18.758 kb on + strand, within GFF2007 at 18.837 kb on + strand, within GFF2007 at 18.887 kb on - strand, within GFF2007 at 19.036 kb on + strand at 19.041 kb on + strand at 19.041 kb on + strand at 19.076 kb on + strand at 19.119 kb on - strand at 19.119 kb on - strand at 19.135 kb on - strand at 19.201 kb on - strand, within GFF2008 at 19.205 kb on - strand, within GFF2008 at 19.363 kb on - strand, within GFF2008 at 19.526 kb on - strand at 19.541 kb on - strand at 19.593 kb on + strand at 19.593 kb on + strand at 19.661 kb on - strand at 19.718 kb on + strand at 19.719 kb on - strand at 19.744 kb on - strand at 21.386 kb on - strand at 21.735 kb on - strand at 21.754 kb on - strand at 21.864 kb on - strand at 21.874 kb on + strand at 21.898 kb on + strand at 21.898 kb on + strand at 21.899 kb on - strand at 22.344 kb on - strand, within GFF2011 at 22.359 kb on + strand, within GFF2011
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 18,758 + GFF2007 0.63 +1.3 18,837 + GFF2007 0.72 -0.2 18,887 - GFF2007 0.78 -0.5 19,036 + -0.4 19,041 + +0.0 19,041 + -0.0 19,076 + +0.2 19,119 - +0.0 19,119 - -0.9 19,135 - -0.1 19,201 - GFF2008 0.23 +0.7 19,205 - GFF2008 0.24 -0.5 19,363 - GFF2008 0.69 +0.4 19,526 - +0.3 19,541 - +0.4 19,593 + +0.5 19,593 + +0.2 19,661 - +0.0 19,718 + +0.7 19,719 - -0.3 19,744 - -0.2 21,386 - -0.6 21,735 - -0.1 21,754 - -0.6 21,864 - +0.3 21,874 + +0.2 21,898 + +0.0 21,898 + +0.1 21,899 - +0.5 22,344 - GFF2011 0.31 -1.5 22,359 + GFF2011 0.32 +1.2
Or see this region's nucleotide sequence