Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1924

Experiment: C.elegans, mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-1
115,167	-		GFF1923	0.12	+0.5
115,191	-		GFF1923	0.14	-0.1
115,293	-		GFF1923	0.23	+0.8
115,378	+		GFF1923	0.31	+0.0
115,378	+		GFF1923	0.31	-0.8
115,378	+		GFF1923	0.31	+0.1
115,378	+		GFF1923	0.31	-0.0
115,379	-		GFF1923	0.31	-0.0
115,379	-		GFF1923	0.31	+1.3
115,379	-		GFF1923	0.31	-0.2
115,379	-		GFF1923	0.31	+0.6
115,382	+		GFF1923	0.31	+0.6
115,531	+		GFF1923	0.45	+0.4
115,700	+		GFF1923	0.60	-0.2
115,749	-		GFF1923	0.64	+0.3
115,859	+		GFF1923	0.74	-0.7
115,912	-		GFF1923	0.79	-0.1
115,925	+		GFF1923	0.80	+0.1
115,926	-		GFF1923	0.80	+0.2
116,137	+				+0.0
116,144	+				+0.4
116,175	+				+0.2
116,404	-		GFF1924	0.18	+0.0
116,451	-		GFF1924	0.22	-0.4
116,548	+		GFF1924	0.28	-1.2
116,549	-		GFF1924	0.29	+0.2
116,643	+		GFF1924	0.35	-0.4
116,644	-		GFF1924	0.35	+1.0
116,646	-		GFF1924	0.35	+0.2
116,646	-		GFF1924	0.35	+0.7
116,697	+		GFF1924	0.39	+0.9
116,698	-		GFF1924	0.39	+0.9
116,710	-		GFF1924	0.40	+0.7
116,757	+		GFF1924	0.43	-0.6
116,757	+		GFF1924	0.43	+0.2
116,758	-		GFF1924	0.43	-0.4
116,758	-		GFF1924	0.43	+0.6
116,835	-		GFF1924	0.49	-0.0
116,835	-		GFF1924	0.49	+0.5
116,835	-		GFF1924	0.49	+0.2
116,835	-		GFF1924	0.49	-1.0
116,835	-		GFF1924	0.49	+0.3
116,835	-		GFF1924	0.49	+0.5
116,835	-		GFF1924	0.49	+0.2
117,013	-		GFF1924	0.61	+0.3
117,018	-		GFF1924	0.62	+1.5
117,088	-		GFF1924	0.66	+0.2
117,088	-		GFF1924	0.66	-0.0
117,321	+		GFF1924	0.83	+0.1
117,322	-		GFF1924	0.83	-0.3
117,542	-				+0.1
117,608	-				+0.1
117,608	-				+0.8
117,654	-				+0.1
117,762	+				-0.2
117,763	-				+0.2
117,953	+		GFF1925	0.21	-0.2
117,954	-		GFF1925	0.21	-1.0
117,994	+		GFF1925	0.24	-0.7
118,093	-		GFF1925	0.31	+0.4
118,142	-		GFF1925	0.35	+0.2
118,217	+		GFF1925	0.40	-0.0
118,218	-		GFF1925	0.40	+0.3
118,218	-		GFF1925	0.40	+0.1
118,222	-		GFF1925	0.41	+0.3
118,225	-		GFF1925	0.41	+0.3
118,404	+		GFF1925	0.54	-0.9
118,405	-		GFF1925	0.54	+0.3