Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1903 and GFF1904 overlap by 8 nucleotides GFF1904 and GFF1905 overlap by 4 nucleotides GFF1905 and GFF1906 are separated by 20 nucleotides GFF1906 and GFF1907 are separated by 80 nucleotides GFF1907 and GFF1908 overlap by 2 nucleotides
GFF1903 - Transketolase, C-terminal section (EC 2.2.1.1), at 99,539 to 100,492
GFF1903
GFF1904 - Transketolase, N-terminal section (EC 2.2.1.1), at 100,485 to 101,315
GFF1904
GFF1905 - FIG00732228: membrane protein, at 101,312 to 102,703
GFF1905
GFF1906 - Putative sugar phosphotransferase component II B, at 102,724 to 102,996
GFF1906
GFF1907 - Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-), at 103,077 to 103,520
GFF1907
GFF1908 - FIG01046667: hypothetical protein, at 103,519 to 103,692
GFF1908
Position (kb) 101
102
103 Strain fitness (log2 ratio) -1
0
1 at 100.374 kb on - strand, within GFF1903 at 100.393 kb on + strand, within GFF1903 at 100.466 kb on - strand at 100.487 kb on - strand at 100.672 kb on - strand, within GFF1904 at 100.922 kb on + strand, within GFF1904 at 100.949 kb on + strand, within GFF1904 at 101.048 kb on + strand, within GFF1904 at 101.095 kb on + strand, within GFF1904 at 101.127 kb on + strand, within GFF1904 at 101.558 kb on + strand, within GFF1905 at 101.561 kb on + strand, within GFF1905 at 101.561 kb on + strand, within GFF1905 at 101.569 kb on + strand, within GFF1905 at 101.769 kb on + strand, within GFF1905 at 101.769 kb on + strand, within GFF1905 at 101.886 kb on - strand, within GFF1905 at 101.931 kb on + strand, within GFF1905 at 102.001 kb on + strand, within GFF1905 at 102.029 kb on - strand, within GFF1905 at 102.176 kb on - strand, within GFF1905 at 102.187 kb on + strand, within GFF1905 at 102.187 kb on + strand, within GFF1905 at 102.190 kb on - strand, within GFF1905 at 102.343 kb on - strand, within GFF1905 at 103.355 kb on - strand, within GFF1907 at 103.482 kb on + strand at 103.482 kb on + strand at 103.524 kb on - strand at 103.580 kb on + strand, within GFF1908 at 103.580 kb on + strand, within GFF1908 at 103.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 100,374 - GFF1903 0.88 -0.7 100,393 + GFF1903 0.90 -0.4 100,466 - +0.0 100,487 - -0.2 100,672 - GFF1904 0.23 -0.4 100,922 + GFF1904 0.53 +0.1 100,949 + GFF1904 0.56 +0.2 101,048 + GFF1904 0.68 +0.5 101,095 + GFF1904 0.73 -1.5 101,127 + GFF1904 0.77 +0.6 101,558 + GFF1905 0.18 -0.6 101,561 + GFF1905 0.18 +0.4 101,561 + GFF1905 0.18 -0.3 101,569 + GFF1905 0.18 +0.6 101,769 + GFF1905 0.33 -0.0 101,769 + GFF1905 0.33 +0.8 101,886 - GFF1905 0.41 +0.9 101,931 + GFF1905 0.44 +0.2 102,001 + GFF1905 0.49 -0.3 102,029 - GFF1905 0.52 +0.1 102,176 - GFF1905 0.62 +0.6 102,187 + GFF1905 0.63 +0.3 102,187 + GFF1905 0.63 +0.8 102,190 - GFF1905 0.63 +0.2 102,343 - GFF1905 0.74 -0.1 103,355 - GFF1907 0.63 +0.2 103,482 + -0.3 103,482 + +0.2 103,524 - -1.1 103,580 + GFF1908 0.35 +0.7 103,580 + GFF1908 0.35 -0.5 103,700 - -0.1
Or see this region's nucleotide sequence