Experiment: C.elegans, mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1881 and GFF1882 are separated by 2 nucleotides GFF1882 and GFF1883 overlap by 4 nucleotides GFF1883 and GFF1884 are separated by 10 nucleotides GFF1884 and GFF1885 are separated by 14 nucleotides GFF1885 and GFF1886 overlap by 4 nucleotides
GFF1881 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 74,054 to 75,889
GFF1881
GFF1882 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 75,892 to 76,194
GFF1882
GFF1883 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 76,191 to 76,745
GFF1883
GFF1884 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 76,756 to 77,298
GFF1884
GFF1885 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 77,313 to 78,290
GFF1885
GFF1886 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 78,287 to 81,013
GFF1886
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1 at 75.872 kb on - strand at 75.911 kb on - strand at 76.010 kb on + strand, within GFF1882 at 76.010 kb on + strand, within GFF1882 at 76.010 kb on + strand, within GFF1882 at 76.011 kb on - strand, within GFF1882 at 76.011 kb on - strand, within GFF1882 at 76.105 kb on - strand, within GFF1882 at 76.153 kb on + strand, within GFF1882 at 76.310 kb on + strand, within GFF1883 at 76.311 kb on - strand, within GFF1883 at 76.311 kb on - strand, within GFF1883 at 76.336 kb on + strand, within GFF1883 at 76.421 kb on - strand, within GFF1883 at 76.600 kb on + strand, within GFF1883 at 76.600 kb on + strand, within GFF1883 at 76.601 kb on - strand, within GFF1883 at 76.655 kb on - strand, within GFF1883 at 76.679 kb on + strand, within GFF1883 at 76.728 kb on - strand at 76.757 kb on + strand at 76.857 kb on - strand, within GFF1884 at 77.157 kb on + strand, within GFF1884 at 77.400 kb on + strand at 77.401 kb on - strand at 77.411 kb on - strand, within GFF1885 at 77.566 kb on + strand, within GFF1885 at 77.766 kb on - strand, within GFF1885 at 77.769 kb on - strand, within GFF1885 at 77.824 kb on + strand, within GFF1885 at 77.870 kb on - strand, within GFF1885 at 77.975 kb on + strand, within GFF1885 at 78.152 kb on - strand, within GFF1885
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-1 remove 75,872 - -0.9 75,911 - -0.4 76,010 + GFF1882 0.39 -0.8 76,010 + GFF1882 0.39 -1.7 76,010 + GFF1882 0.39 -0.7 76,011 - GFF1882 0.39 -0.8 76,011 - GFF1882 0.39 -1.5 76,105 - GFF1882 0.70 -0.8 76,153 + GFF1882 0.86 -1.5 76,310 + GFF1883 0.21 -1.0 76,311 - GFF1883 0.22 +0.0 76,311 - GFF1883 0.22 -1.0 76,336 + GFF1883 0.26 -1.4 76,421 - GFF1883 0.41 -1.4 76,600 + GFF1883 0.74 -0.7 76,600 + GFF1883 0.74 -0.5 76,601 - GFF1883 0.74 -0.5 76,655 - GFF1883 0.84 -1.2 76,679 + GFF1883 0.88 -1.9 76,728 - -1.5 76,757 + -0.8 76,857 - GFF1884 0.19 -1.4 77,157 + GFF1884 0.74 -1.7 77,400 + -1.1 77,401 - -2.6 77,411 - GFF1885 0.10 -1.5 77,566 + GFF1885 0.26 -0.4 77,766 - GFF1885 0.46 -1.4 77,769 - GFF1885 0.47 -1.1 77,824 + GFF1885 0.52 -1.6 77,870 - GFF1885 0.57 -1.9 77,975 + GFF1885 0.68 -1.1 78,152 - GFF1885 0.86 -1.2
Or see this region's nucleotide sequence